BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig918 599 e-171
3x_Contig1427 127 4e-29
>3x_Contig918
Length = 2482
Score = 599 bits (302), Expect = e-171
Identities = 425/454 (93%), Gaps = 10/454 (2%)
Strand = Plus / Minus
Query: 492 tctttgggtatagcgggatccaatgccatattccaagacacatttccctttgctagttgg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2482 tctttgggtatagcgggatccaatgccatattccaagacacatttccctttgctagttgg 2423
Query: 552 aaataagtggtatggaatgtccgtttatgatagtttatgcatntgagcatcgatgttaga 611
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2422 aaataagtggtatggaatgtccgtttatgatagtttatgcatttgagcatcgatgttaga 2363
Query: 612 ttggtttcgttgttttggcagtttagaggaaattctaacagtgtatctaaggctggtatc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 ttggtttcgttgttttggcagtttagaggaaattctaacagtgtatctaaggctggtatc 2303
Query: 672 tggtattacactctcgattttaaca-tgttcgctgtttcgatcctganatacacagttga 730
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 2302 tggtattacactctcgattttaacattgttcgctgtttcgatcctgagatacacagttga 2243
Query: 731 tttgaaaatttcatagaacttattatccgaaaaaattatatcttcaagagagatactatg 790
|||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||| |||
Sbjct: 2242 tttgaaaattccatagaacttataatccgaagaaataatatcttcaagagagatacaatg 2183
Query: 791 accaagattactgctaggaaccagtactttctggtacgttgaaaatcagncagttaaggt 850
|| | ||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||||
Sbjct: 2182 acaagaattactgctagaaaccagtactttct-gtacgttgagaatcag-caggtaaggt 2125
Query: 851 attccatatatagacaatttgagaanatagggttgagccatgggttaccgattgaataac 910
| ||||||||||||||| ||||||| || |||| ||| ||| ||||| |||||| |||||
Sbjct: 2124 a-tccatatatagacaa-ttgagaagat-gggtagag-cattggtta-cgattg-ataac 2071
Query: 911 gtttacgcttaacattttagggacattcagnaag 944
|||||||| ||||| |||||| |||||||| |||
Sbjct: 2070 gtttacgc-taacaatttaggaacattcagaaag 2038
>3x_Contig1427
Length = 10253
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 44 aatgtctttgtccgtaattgtttcagtttcagtgtcctttttagggtgagccacattgtt 103
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10176 aatgtctttgtccgtaattgtttcagtttcagtgtcctttttattgtgagccacattgtt 10235
Query: 104 atttgaagattt 115
||||||||||||
Sbjct: 10236 atttgaagattt 10247
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6433
Number of Sequences: 1807
Number of extensions: 6433
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)