BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE08FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig757 1370 0.0
>3x_Contig757
Length = 2436
Score = 1370 bits (691), Expect = 0.0
Identities = 814/843 (96%), Gaps = 9/843 (1%)
Strand = Plus / Plus
Query: 87 tgggtagacaacagaacgttgaggtgaaattacctaattacgctagaaatattgaaatta 146
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 tgggtagacaacagaacgttgaggtgaaattacctaatttcgctagaaatattgaaatta 313
Query: 147 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acttgccatcgatcgatgttagcactgcaagccaaaatcaattaaggactttcttgacaa 373
Query: 207 agaacaccacccagtatttgctgagcagaacagcattagacttcggctcaactgaagcta 266
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agaacaccacccagtatttgttgagcagaacagcattagacttcggctcaactgaagcta 433
Query: 267 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agctgcaacagtttgttgaaaactatcaagccgttttagcgcaaaactcggttgctgaca 493
Query: 327 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttacgacaaatacgtatcccaatacaaacagctgttaactcaaaaggctactgaatctg 553
Query: 387 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacgacagaagaagctcatgcagatgcacaagcagaagaaacgaaataaaggatagact 613
Query: 447 tatccgtaaccaatatttcccagaaccggtcatgtatatatatataagaatcaacgtcag 506
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 614 tatccgtaaccaatatttcccagaaccgttcatgtatatatatataagaatcaacgtcag 673
Query: 507 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaagaatattactagaaattcaaaaaacattaacaaaatgaccataattcataaagaaa 733
Query: 567 ctcacacaatatacttctattatataattattgatgtgccggcacggattcatcgcaaat 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 734 ctcacacaatatacttctattatataattattgatgtgccgtcacggattcatcgcaaat 793
Query: 627 tgagtaaat-gttcgtcaattagcgcctggtaccatgtcactcccgctagccaactcggg 685
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgagtaaatcgttcgtcaa-tagcgcctggtaccatgtcactcccgctagccaactcggg 852
Query: 686 cactgagtttgttcgatctgcaaggaaat-accgtgaacgagttttacatcattctattt 744
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||
Sbjct: 853 cactgagtttgttcgatctgcaaggaaatcaccgtcaacgagttttccatcattcttttt 912
Query: 745 aggaatttcaattgtggtg-aattattcagaagctgacataaataccaatcgatgatctc 803
| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 913 aagaatttcaattttggtgaaattattcaaaagctgacataaataccaatcgatgatctc 972
Query: 804 gcaggttctgtgaatccaac-gaaatctattgggcacataacggtatacttgtgaggtat 862
|||| | ||||| ||||||| |||||||||| |||| |||||||||||||| ||||||||
Sbjct: 973 gcagttcctgtg-atccaacggaaatctatt-ggcaaataacggtatactt-tgaggtat 1029
Query: 863 catatcaccaattatgaccggaggtagctagggaggcttcaagggaagaaactactactg 922
|| ||||||||| ||||| ||||| ||||| |||||||||| || ||||||||| |||||
Sbjct: 1030 caaatcaccaataatgacaggagg-agctaaggaggcttcagggaaagaaactaatactg 1088
Query: 923 aaa 925
|||
Sbjct: 1089 aaa 1091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9273
Number of Sequences: 1807
Number of extensions: 9273
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)