BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE09FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1639 0.0
>3x_Contig1708
Length = 19451
Score = 1639 bits (827), Expect = 0.0
Identities = 868/879 (98%), Gaps = 2/879 (0%)
Strand = Plus / Plus
Query: 90 gctgttaacgcggaagaacagcagtatttggatttatgtgaaaggattatcaatgaggga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4579 gctgttaacgcggaagaacagcagtatttggatttatgtgaaaggattatcaatgaggga 4638
Query: 150 gaattcagaccagatagaactggtacagggacttattccctttttgcgcctccacagtta 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4639 gaattcagaccagatagaactggtacagggacttattccctttttgcgcctccacagtta 4698
Query: 210 cggtttaatttgagcaatgatactttcccgcttctcactacgaagagagtgtttacgaaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 cggtttaatttgagcaatgatactttcccgcttctcactacgaagagagtgtttacgaaa 4758
Query: 270 ggtattattttggagctcttatggtttgttgctggatgtacagacgggaagaaattatca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4759 ggtattattttggagctcttatggtttgttgctggatgtacagacgggaagaaattatca 4818
Query: 330 gaacaaggcgttaagatatgggaaggtaacggttctcgtgagtacctggactcacttggg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4819 gaacaaggcgttaagatatgggaaggtaacggttctcgtgagtacctggactcacttggg 4878
Query: 390 ttgactgacagaagagagggggatttaggaccagtttacgggttccaatggagacatttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4879 ttgactgacagaagagagggggatttaggaccagtttacgggttccaatggagacatttt 4938
Query: 450 ggggccgaatataagacatgtgatgatgattatagtggtcaaggtgttgatcagttgaag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4939 ggggccgaatataagacatgtgatgatgattatagtggtcaaggtgttgatcagttgaag 4998
Query: 510 gagattattcataagttgaagacaaatccatacgacagaagaataattctttctgcatgg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4999 gagattattcataagttgaagacaaatccatacgacagaagaataattctttctgcatgg 5058
Query: 570 aaccctccggatttccccaagatggctttaccgccatgccatgttttctcgcaattttac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5059 aaccctccggatttccccaagatggctttaccgccatgccatgttttctcgcaattttac 5118
Query: 630 gtcagtttccccaagggagaaggtgccaaaccaagattgtcatgtgtactttatcagaga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5119 gtcagtttccccaagggagaaggtgccaaaccaagattgtcatgtgtactttatcagaga 5178
Query: 690 tcatgtgatatgggtctaggagtaccctttaacatcgcgtcgtatgcgctactgacgaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5179 tcatgtgatatgggtctaggagtaccctttaacatcgcgtcgtatgcgctactgacgaag 5238
Query: 750 atgattgctatggtctgtgatatggaacctggtgaatttattcacactttgggtgatgcg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5239 atgattgctatggtctgtgatatggaacctggtgaatttattcacactttgggtgatgcg 5298
Query: 810 catgtttataaagatcatgttgatgcattaaggacacaaaatgccagaaagccaggagct 869
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct: 5299 catgtttataaagatcatgttgatgcattaaggacacaaattgccagagagccaagagct 5358
Query: 870 ttcccaaaattgaagat-aagaagaatgtcagtgatttcgacgatttcaaatacgagaac 928
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||
Sbjct: 5359 ttcccaaaattgaagataaagagaaatgtcagtgatatcgacgatttcaaatacgaagac 5418
Query: 929 ttcgaaataactgactataa-cctcatgggaaaattcaa 966
|||||||||||||||||||| ||||||||||| ||||||
Sbjct: 5419 ttcgaaataactgactataaccctcatgggaagattcaa 5457
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5793
Number of Sequences: 1807
Number of extensions: 5793
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)