BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE09RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 686 0.0
3x_Contig696 232 1e-60
>3x_Contig1727
Length = 17872
Score = 686 bits (346), Expect = 0.0
Identities = 428/450 (95%), Gaps = 5/450 (1%)
Strand = Plus / Minus
Query: 525 ccacccatgacacagaagacaccgaaagagaaaatccagactctgacaacggtaacgatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17862 ccacccatgacacagaagacaccgaaagagaaaatccagactctgacaacggtaacgatg 17803
Query: 585 tcgttccagttttgagaccaccaaccgaacaaacagaacatggttgcgatgatatcaacg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17802 tcgttccagttttgagaccaccaaccgaacaaacagaacatggttgcgatgatatcaacg 17743
Query: 645 attagaacggcaccagataattgccaagatgggatagaggaccagaatggaccagcagct 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17742 attagaacggcaccagataattgccaagatgggatagaggaccagaatggaccagcagct 17683
Query: 705 ctggtgatgaaaatcaaccagttttcagtcaaggagatttgncagaacaaaacaccatcg 764
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 17682 ctggtgatgaaaatcaaccagttttcagtcaaggagatttgcaagaacaaaacaccatcg 17623
Query: 765 atggaaccgaagtttttggatatacccaccctttggaacanacatagtggtcaaggtgat 824
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 17622 atggaaccgaag-ttttggataataccaccctttggaacaaacatagtggtcaaggtgat 17564
Query: 825 ccaagtaccgatagccaaaa-tataccccagatgacggacataccccatagtctttttca 883
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||
Sbjct: 17563 ccaagtaccgatagccaaaattatacccaagatgacggacataccccatagtc-ttctca 17505
Query: 884 gtttccacttgaacaggctttggagagtatggagctttatcgtaagccatagccaagtta 943
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct: 17504 agttccacttg-acaggctttggagagtatggagcattatcgtaagcaatagccaaggta 17446
Query: 944 gcaccatcagccgaaaatggcantnaagac 973
||| |||||| ||||||| ||| | |||||
Sbjct: 17445 gcaacatcag-cgaaaatagcaatgaagac 17417
>3x_Contig696
Length = 2788
Score = 232 bits (117), Expect = 1e-60
Identities = 127/129 (98%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 42 gctttatagttaaaatgaggcaaataaaaca-ccacagagaaaataccagtcattgagct 100
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 2658 gctttatagttaaaatgaggcaaaaaaaacaaccacagagaaaataccagtcattgagct 2717
Query: 101 aaaaataatttcagatgacaacacattactcatttaaacgcttcttaccattttcattca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 aaaaataatttcagatgacaacacattactcatttaaacgcttcttaccattttcattca 2777
Query: 161 ttcaaaaaa 169
|||||||||
Sbjct: 2778 ttcaaaaaa 2786
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8325
Number of Sequences: 1807
Number of extensions: 8325
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 2
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)