BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE12FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig336 1132 0.0
3x_Contig1616 333 4e-91
>3x_Contig336
Length = 1357
Score = 1132 bits (571), Expect = 0.0
Identities = 589/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 86 tactgactctgtagctcccttttaatatcaacttttgtgcttacttcttgattgaccgct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tactgactctgtagctcccttttaatatcaacttttgtgcttacttcttgattgaccgct 540
Query: 146 gagccaatattaccggtagggatgaatatttgattctatagatatatgaagttttctctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gagccaatattaccggtagggatgaatatttgattctatagatatatgaagttttctctt 480
Query: 206 ttcctatttctctactttctgttttctactttttttttttgtcaaattatcagttttctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttcctatttctctactttctgttttctactttttttttttgtcaaattatcagttttctt 420
Query: 266 tattttctgtcattctgatacggagggaaaagaagcattctgatatgctgcagagattta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tattttctgtcattctgatacggagggaaaagaagcattctgatatgctgcagagattta 360
Query: 326 acagagggaatcccccataaaaagcacggaaattttatgaacgcttattatttagagccg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagagggaatcccccataaaaagcacggaaattttatgaacgcttattatttagagccg 300
Query: 386 cgaaactacttcttacccggggatagctcttttggttagtcattttttcttaggacatga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgaaactacttcttacccggggatagctcttttggttagtcattttttcttaggacatga 240
Query: 446 gcgtattaccctataaa-taatgtagncagatcaaccaccaggtctatttttgatccctg 504
||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||
Sbjct: 239 gcgtattaccctagaaacaaaagtagtcagatcaaccaccaggtctatttttgatccctg 180
Query: 505 agctgtgatttgctgtgacgtggcacagaattaaactttaccgtgcttcagtaatattcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agctgtgatttgctgtgacgtggcacagaattaaactttaccgtgcttcagtaatattcc 120
Query: 565 tattggttctttcttccggacacactcaggagtcagagggctaagctctgcaactgttgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tattggttctttcttccggacacactcaggagtcagagggctaagctctgcaactgttgg 60
Query: 625 agcttactagctttgttacgataaattcctcagaagccggaaagacgagcttta 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agcttactagctttgttacgataaattcctcagaagccggaaagacgagcttta 6
>3x_Contig1616
Length = 10468
Score = 333 bits (168), Expect = 4e-91
Identities = 267/292 (91%), Gaps = 6/292 (2%)
Strand = Plus / Plus
Query: 661 ccggaaagacgagctttatggtgtggtgtccgggtgttttcatagaaactaccgtaaaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggaaagacgagctttatggtgtggtgtccgggtgttttcatagaaactaccgtaaaac 60
Query: 721 tgtattgcttcaatcatctttttttttagcgttttctgtcgaatgggttctattggccga 780
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 61 tgtattgcttcaatcatctttttttttagcgttttctgtcgattgtgttctattggccga 120
Query: 781 tttctggaccggagcgatgtttcgcataataaattcactcaaact-ggaaaagtaattca 839
||||||||| | |||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 121 tttctggacggtagcgatgtttcgcatagtaaattcactcagactgggaaaagtaattcg 180
Query: 840 aacg-aaacagtgcttagcgatgtttcgta-ttaccaaaagatcctagggaa-gacctac 896
|||| |||||||||| ||||||| |||||| |||| ||| |||| || |||| ||| |
Sbjct: 181 aacgaaaacagtgctaagcgatg-ttcgtatttacaaaaggatcgtaaggaatgactagc 239
Query: 897 tttgggaaaaaccgtattttggaattggaccga-attaccatcgggggatag 947
| ||||||| | ||||||||||||||||||||| |||||||||||| |||||
Sbjct: 240 tatgggaaatagcgtattttggaattggaccgatattaccatcgggagatag 291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,246
Number of Sequences: 1807
Number of extensions: 12246
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)