BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZE12RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig969 940 0.0
>3x_Contig969
Length = 3546
Score = 940 bits (474), Expect = 0.0
Identities = 530/544 (97%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 418 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 3451
Query: 478 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 3391
Query: 538 agtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatcttaga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 agtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatcttaga 3331
Query: 598 tggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtccttaaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtccttaaa 3271
Query: 658 gatgaaaccactgtcgtacaagtccaatagtactagacgcatgatttcacctagatagta 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3270 gatgaaaccactgtcgtacaagtccaatagtactagacgcatgatttcacctagatagta 3211
Query: 718 accagaagtcatcttttcgaaagcttgntgacctggtcttggagattcttcatcgattat 777
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3210 accagaagtcatcttttcgaaagcttgttgacctggtcttggagattcttcatcgattat 3151
Query: 778 aacatcgtatttggnttcttgcaacaccaaatgttcgttatcgaaagacccatattcaca 837
|||||||||||||| | | ||||||||||||||||||||||||| || |||||||||||
Sbjct: 3150 aacatcgtatttggttcttggcaacaccaaatgttcgttatcgaaggaaccatattcaca 3091
Query: 838 gttgattgccattggagaatctgtaccgatatcttctggccac-aaccttcc-atttctc 895
||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||
Sbjct: 3090 gttgattgccattggagaatctggaccgatatcttctggcaacaaaccttccaatttctc 3031
Query: 896 -ataccagaaac-acatcgtagtaagcaccgttgacaccagtaccgattatgatacccat 953
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3030 aataccagaaacaacatcgtagtaagcaccgttgacaccagtaccgataatgatacccat 2971
Query: 954 ctta 957
||||
Sbjct: 2970 ctta 2967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7524
Number of Sequences: 1807
Number of extensions: 7524
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)