BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF02FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1602 0.0
>3x_Contig1295
Length = 7117
Score = 1602 bits (808), Expect = 0.0
Identities = 859/870 (98%), Gaps = 5/870 (0%)
Strand = Plus / Plus
Query: 91 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 350
Query: 151 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 410
Query: 211 cgaagacgatttttttcaccattgtggaaagagttaccaagtctgttgatgatatgaccg 270
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgaagacgatgtctc-caccattgtggaaagagttaccaagtctgttgatgatatgaccg 469
Query: 271 ttctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacg 529
Query: 331 actatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttcttta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 actatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttcttta 589
Query: 391 aaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaat 649
Query: 451 atttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaac 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaac 709
Query: 511 aaagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggt 769
Query: 571 cctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaa 829
Query: 631 gtagatatatatatgtacgtcttttttcggcattgtagagcatctgctgtaagcttatca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtagatatatatatgtacgtcttttttcggcattgtagagcatctgctgtaagcttatca 889
Query: 691 gctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcattaact 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcattaact 949
Query: 751 tcgcctcgctcctaatgtaaagatatatacctaagaaataantaggaaatgat-agtgaa 809
||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct: 950 tcgcctcgctcctaatgtaaagatatatacctaagaaataataagg-aatgataagtgaa 1008
Query: 810 tctatcc-aaaacctggtccaactattcttcaacctagttntctttcactgtgtgagtca 868
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1009 tctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtgtgagtca 1068
Query: 869 cactattataccaaatacccatatgtaagttacatctttttttcagtgtcactatcaaaa 928
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1069 cactattataccaaatacccatatgtaagttacatc-ttttttcagtgtcactatcaaaa 1127
Query: 929 ctcctgtattgttatccataaactttagaa 958
||||||||||||||||||||||||||||||
Sbjct: 1128 ctcctgtattgttatccataaactttagaa 1157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7147
Number of Sequences: 1807
Number of extensions: 7147
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)