BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF02RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1667 0.0
>3x_Contig1340
Length = 7156
Score = 1667 bits (841), Expect = 0.0
Identities = 910/926 (98%), Gaps = 6/926 (0%)
Strand = Plus / Plus
Query: 49 taaagatcccattgaaaaaatgg-cagaaattaaaatatccgggtaacgaaatatttatt 107
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 4718 taaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatttatt 4777
Query: 108 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 4837
Query: 168 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctttatctcctt 227
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 4838 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 4897
Query: 228 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 4957
Query: 288 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 5017
Query: 348 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 5077
Query: 408 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 5137
Query: 468 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 5197
Query: 528 cttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaagacag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 cttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaagacag 5257
Query: 588 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5258 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 5317
Query: 648 gcctcagtacaatatatcccaaaaattagggaccgtcaaatcacctagctctctgtaatc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5318 gcctcagtacaatatatcccaaaaattagggaccgtcaaatcacctagctctctgtaatc 5377
Query: 708 catgtgttagccttttctatgatttatagttgtcacccacacaccacacgtntaatattc 767
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5378 catgtgttagccttttctatgatttatagttgtcacccacacaccacacgtttaatattc 5437
Query: 768 aattgtaaaagaaaaaaagtttg-aaaaattctggattcag-agaattnnggaagaatcc 825
||||||||||||||||||||||| |||||||||||| |||| |||||| | |||||
Sbjct: 5438 aattgtaaaagaaaaaaagtttgaaaaaattctgga-tcagaagaattggaaagaaatcc 5496
Query: 826 acgatgagcttaaagctgtctaattcaattgattcaatgaggctacatatttgatattct 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 acgatgagcttaaagctgtctaattcaattgattcaatgaggctacatatttgatattct 5556
Query: 886 attcatccggttgattttgttggcagtcagtgtggcaaatcaa-ttttactcaatcttgc 944
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5557 attcatccggttgattttgttggcagtcagtgtggcaaatcaatttttactcaatcttgc 5616
Query: 945 tagagat-tcaaagtggaattatcac 969
||||||| ||||||||||||||||||
Sbjct: 5617 tagagatatcaaagtggaattatcac 5642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9131
Number of Sequences: 1807
Number of extensions: 9131
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)