BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF03FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1584 0.0
>3x_Contig1502
Length = 14970
Score = 1584 bits (799), Expect = 0.0
Identities = 853/867 (98%), Gaps = 3/867 (0%)
Strand = Plus / Minus
Query: 89 atgaagtaaattatcattccccagtgactgagagattctacgagattgagcttggctaga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2585 atgaagtaaattatcattccccagtgactgagagattctacgagattgagcttggctaga 2526
Query: 149 tctcaggaaatcgtcagtaaagagagcagagtatgagcttgcagaatttttcctattcga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525 tctcaggaaatcgtcagtaaagagagcagagtatgagcttgcagaatttttcctattcga 2466
Query: 209 aggtacagatattttaattggttctgaagtgtcattaggatctaagctaataggtggtgg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2465 aggtacagatattttaattggttctgaagtgtcattaggatctaagctaataggtggtgg 2406
Query: 269 tgttgatctcttagagctttctccgcttggcctgaatggaaccctaaataccatgccacc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2405 tgttgatctcttagagctttctccgcttggcctgaatggaaccctaaataccatggcagc 2346
Query: 329 ggatgaactcgttacacctgaagcagcgtttgaatgacgtctctgagaagactgctccga 388
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 ggatgaactggttacacctgaagcagcgtttgaatgacgtctctgagaagactgctccga 2286
Query: 389 tatttctcccaaagagactatatgatcaggatttactcccaaagaggtaggtaatctgtc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2285 tatttctcccaaagagactatatgatcaggatttactcccaaagaggtaggtaatctgtc 2226
Query: 449 gttggcgttagtagcggttgctaagctatctgaatgagaagctatcgaatgagacgagtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 gttggcgttagtagcggttgctaagctatctgaatgagaagctatcgaatgagacgagtt 2166
Query: 509 atcatttgttaatttagatgtgcttggcgtattgaagaataagcaagcggatttcctttc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2165 atcatttgttaatttagatgtgcttggcgtattgaagaataagcaagcggatttcctttc 2106
Query: 569 cattggaggcgtgctgctttgcacagactgtgcacttggtctgtggcggctaaaaaatgt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 cattggaggcgtgctgctttgcacagactgtgcacttggtctgtggcggctaaaaaatgt 2046
Query: 629 gtccaaagatccttgtgatgttggcttcttgtcatccttagctatggaagatattgaact 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 gtccaaagatccttgtgatgttggcttcttgtcatccttagctatggaagatattgaact 1986
Query: 689 agatgtatgcggcgagacgcctaactgccctacgtttcctgaagaaagttttgaaatctg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 agatgtatgcggcgagacgcctaactgccctacgtttcctgaagaaagttttgaaatctg 1926
Query: 749 ggaaaagctttccggtattttgcgatctgggtgaacttgaacataagcattagcccaaag 808
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1925 ggaaaagctttccggtattttgcgatctgttgaaacttgaacataagcattagccaaaag 1866
Query: 809 catatcgaagtacctaccccatctctttctaagtaaaaaacttggnaacggcgacagatt 868
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1865 catatcgaagtacctaccccatctctttctaagtaaaaaacttgg-aacggcgacagatt 1807
Query: 869 cgtccatcttccgttatgaactcaaaatctgctagtagcttgttgtagacttcccaagna 928
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1806 cgt-catcttccgttatgaactcaaaatctgctagtagcttgttgtagacttccaaag-a 1749
Query: 929 atttttacctaaaaccatggaataaga 955
|| ||||||||||||||| ||||||||
Sbjct: 1748 atctttacctaaaaccattgaataaga 1722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5106
Number of Sequences: 1807
Number of extensions: 5106
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)