BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF03RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1663 0.0
>3x_Contig1469
Length = 9240
Score = 1663 bits (839), Expect = 0.0
Identities = 911/929 (98%), Gaps = 5/929 (0%)
Strand = Plus / Minus
Query: 48 tctagtttggttaacatgtttagagaaaaagagctcttgcatgaacctggagaagcatct 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5647 tctagtttggttaacatgttgagagaaaaagagctcttgcatgaacctggagaagcatct 5588
Query: 108 attactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgcaacta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 attactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgcaacta 5528
Query: 168 ccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacgccttacgcaa 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5527 ccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacgccagacgcaa 5468
Query: 228 aacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaatgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5467 aacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaatgat 5408
Query: 288 aaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataaatgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 aaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataaatgt 5348
Query: 348 agtatatgatgtaagagatttggtaatactcttgaagaaaaggagttggaaatacaacat 407
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5347 agtatatgtggtaagagatttggtaatactcttgaagaaaaggagttggaaatacaacat 5288
Query: 408 cttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccactaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287 cttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccactaca 5228
Query: 468 tctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcagacttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5227 tctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcagacttt 5168
Query: 528 aaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacctaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5167 aaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacctaca 5108
Query: 588 tttgcgaacaacagggaagattctactgatgcaatctatactaaactcaggaataaatat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5107 tttgcgaacaacagggaagattctactgatgcaatctatactaaactcaggaataaatat 5048
Query: 648 attgtagtaccggattatatcacagatatgaagttccagtgtcctatttgtaccgaatcc 707
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047 attgtagtaccggattatgccacagatatgaagttccagtgtcctatttgtaccgaatcc 4988
Query: 708 acatatggtaaatatgatgaagatctgggagaatggatttggagcaactgcgtacaggtg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4987 acatatggtaaatatgatgaagatctgggagaatggatttggagcaactgcgtacaggtg 4928
Query: 768 ggagacanattc-tncatgccacttgttattatgaggcagctaaaagtc-acagtcaaac 825
||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4927 ggagacaaattcttccatgccacttgttattatgaggcagctaaaagtcaacagtcaaac 4868
Query: 826 accttctcatcttcatcattccaaaatcttcaattagatcttggtatttttaacgagctg 885
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4867 acctcctcatctccatcattccaaaatcttcaattagatcttggtatttttaacgagctg 4808
Query: 886 cttcaatgagttgatgaatagctagtgctgatcaa-tgtatatttcaactctag-tggct 943
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 4807 cttcaatgagttgatgaatagctagtgctgatcaattgtatattcgaactctagttggct 4748
Query: 944 tatcggcatgaatttcgta-cattttctt 971
||||||||||||||||||| |||||||||
Sbjct: 4747 tatcggcatgaatttcgtaccattttctt 4719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7853
Number of Sequences: 1807
Number of extensions: 7853
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)