BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF04FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1530 0.0
>3x_Contig1184
Length = 5183
Score = 1530 bits (772), Expect = 0.0
Identities = 824/839 (98%), Gaps = 2/839 (0%)
Strand = Plus / Plus
Query: 87 atgcctcaatggaaccaagtgttgatatcaacgatattgagcatgttccaggcactggta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 atgcctcaatggaaccaagtgttgatatcaacgatattgagcatgttccaggcactggta 3755
Query: 147 tgtttttcacagccaatgaaggtattccaatgcatacgtattatattccaaatctagggc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 tgtttttcacagccaatgaaggtattccaatgcatacgtattatattccaaatctagggc 3815
Query: 207 cagcgccaaggtggtgttcgttcttggattcgatcacagaagaattggaagagaaaccaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 cagcgccaaggtggtgttcgttcttggattcgatcacagaagaattggaagagaaaccaa 3875
Query: 267 gcgattctgtttactcgaactacagattcatcacgaaggcagatgtgaagaaattgaatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3876 gcgattctgtttactcgaactacagattcatcacgaaggcagatgtgaagaaattgaatt 3935
Query: 327 tgactcacttgattggctccaaggttttgagagcatacatgcacggtttcttcatcaata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 tgactcacttgattggctccaaggttttgagagcatacatgcacggtttcttcatcaata 3995
Query: 387 cagagttgtatgataaggtagcattgattgctaatccaaactcttaccgtgatgaaagag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3996 cagagttgtatgataaggtagcattgattgctaatccaaactcttaccgtgatgaaagag 4055
Query: 447 aaagagaaattagacgtcggattgaaaaggaaagagaatcaagaatcaagagtacaggtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4056 aaagagaaattagacgtcggattgaaaaggaaagagaatcaagaatcaagagtacaggtg 4115
Query: 507 ctattactacatctaaggtcaaggttaacaagatgttggttgataagttgagcgaaaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 ctattactacatctaaggtcaaggttaacaagatgttggttgataagttgagcgaaaaac 4175
Query: 567 gtggtgataaagttgctggtaaagtattggaagatgatcgtttcaaggaaatgtttgaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4176 gtggtgataaagttgctggtaaagtattggaagatgatcgtttcaaggaaatgtttgaag 4235
Query: 627 atgatgccttccaagtggatgaagacgactatgattacaagcaattgaatcctgttaaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236 atgatgccttccaagtggatgaagacgactatgattacaagcaattgaatcctgttaaat 4295
Query: 687 ctgctagagaaacctcggaaggtgccgccaagcgtattagagctttgacggcggctgaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4296 ctgctagagaaacctcggaaggtgccgccaagcgtattagagctttgacggcggctgaag 4355
Query: 747 aaatcgatgaagaaagaatagccgctagagatggcaaatctaactattcagacgaatctg 806
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4356 aatcggatgaagaaagaatagccgctagagatggcaaatctaactattcagacgaatctg 4415
Query: 807 actctgaatccggatctgagtctgatgaagggaacggtgaaagagatcaagatattgtag 866
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 4416 actctgaatccgaatctgagtctgatgaaggaaacggtgaaagagatcaagata-tgtca 4474
Query: 867 nagaatg-aaaggaggccatcgctaagcaagtatcggtagtgaaacgtttaagagaggc 924
|||| | |||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 4475 gagaaggaaaagaaggccatcgctaagcaagtagcggtagtgaaacgtagaagagaggc 4533
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7420
Number of Sequences: 1807
Number of extensions: 7420
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)