BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF04RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1657 0.0
>3x_Contig1654
Length = 17174
Score = 1657 bits (836), Expect = 0.0
Identities = 880/893 (98%), Gaps = 3/893 (0%)
Strand = Plus / Minus
Query: 47 taatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatatttatat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 taatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatatttatat 8612
Query: 107 atatatatatatctaattaattccttcattggattccaagttgttctcgcaacctttgat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 atatatatatatctaattaattccttcattggattccaagttgttctcgcaacctttgat 8552
Query: 167 tctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttcttcttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 tctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttcttcttt 8492
Query: 227 cacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttctcta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 cacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttctcta 8432
Query: 287 cctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcgacat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8431 cctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcgacat 8372
Query: 347 gttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaattttg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 gttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaattttg 8312
Query: 407 caattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaacttattga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 caattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaacttattga 8252
Query: 467 atgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgccctta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 atgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgccctta 8192
Query: 527 aatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgcatctg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 aatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgcatctg 8132
Query: 587 aaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatggtcgt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8131 aaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatggtcgt 8072
Query: 647 tccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtcgatt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8071 tccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtcgatt 8012
Query: 707 ttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgntctagcct 766
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8011 ttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttctagcct 7952
Query: 767 nncacatttgcatttgagcttgagcatcaatcagctttttgggaaaggtcttttnttttc 826
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 7951 ccaacatttgcatttgagcttgagcatcaatcagc-ttttgggaaaggtctttt-ttttc 7894
Query: 827 atcttgtaaaacttctatncgagattcatattcaatccgntgngtatgccatcttgctga 886
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 7893 atcttgtaaaacttctatccgagattcatattcaatccgttgtgtatgccatcttgctga 7834
Query: 887 aatttcctcttaagncagactttgttctttgnatcttgtttgcaaggtctaac 939
| |||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 7833 attttcctctaaagtcagactttgttctttg-atcttgtttgcaaggtctaac 7782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,130
Number of Sequences: 1807
Number of extensions: 13130
Number of successful extensions: 1712
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)