BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZF05RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1490                                                        1677   0.0  

>3x_Contig1490 
          Length = 9411

 Score = 1677 bits (846), Expect = 0.0
 Identities = 908/925 (98%), Gaps = 4/925 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttaaccttgagtgagtgaattattcgagaatgtactggtttatactggaaaagtaatg 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  gcttaaccttgagtgagtgaattattcgagaatgtactggtttatactggaaaagtaatg 815

                                                                        
Query: 104  tagttgttagagctttgtttgtctgtgaattgggcaatactaaagctgggactggtaccg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  tagttgttagagctttgtttgtctgtgaattgggcaatactaaagctgggactggtaccg 875

                                                                        
Query: 164  ggagataggggttgaggtatattttgctttgctattagttttcttaataaggtgatttta 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  ggagataggggttgaggtatattttgctttgctattagttttcttaataaggtgatttta 935

                                                                        
Query: 224  gggtatcttttgatagatgcttatagaaagaataggtgaaaaaaaaagtttatagaatat 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  gggtatcttttgatagatgcttatagaaagaataggtgaaaaaaaaagtttatagaatat 995

                                                                        
Query: 284  aagcgtagtgaagaggtatataaagggagaccatccgaagaatcatttgttgagtgcttc 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  aagcgtagtgaagaggtatataaagggagaccatccgaagaatcatttgttgagtgcttc 1055

                                                                        
Query: 344  ctgctttggaattcaattacatcaattgtatcaatagtggtctatctgatagaaataaac 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ctgctttggaattcaattacatcaattgtatcaatagtggtctatctgatagaaataaac 1115

                                                                        
Query: 404  aacaattgtcaggatcatcaaacgcatcaacagtttattgtctagaaagaagatattact 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 aacaattgtcaggatcatcaaacgcatcaacagtttattgtctagaaagaagatattact 1175

                                                                        
Query: 464  acaatgaacgacgaaacacaatttacaaataaggccaacgaaattatccgtttggcccag 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 acaatgaacgacgaaacacaatttacaaataaggccaacgaaattatccgtttggcccag 1235

                                                                        
Query: 524  aaattggctcaggatcacagacatgctcagttacaaccaattcacttacttgctgcattt 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 aaattggctcaggatcacagacatgctcagttacaaccaattcacttacttgctgcattt 1295

                                                                        
Query: 584  gttgagccaaacgaggatggttctgttggattcttacaaaacttggtggaattagcgaaa 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 gttgagccaaacgaggatggttctgttggattcttacaaaacttggtggaattagcgaaa 1355

                                                                        
Query: 644  tatgattatgaacctttgaaaagggccatcaacagaaacctagtcaggactccatctcag 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 tatgattatgaacctttgaaaagggccatcaacagaaacctagtcaggactccatctcag 1415

                                                                        
Query: 704  acgcccgcaccattagaaattcagccaagttatgctttcgggcaggtctttgaagatact 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 1416 acgcccgcaccattagaaattcagccaagttatgctttcgggcaggtcttgaaagatact 1475

                                                                        
Query: 764  tcagaaaattaggaaacagcanaaagattcattcgtcggtcaagatcatatattgactgc 823
            |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 tcag-aaattaggaaacagcaaaaagattcattcgtcggtcaagatcatatattgactgc 1534

                                                                        
Query: 824  tttgntc-aagatgcaacaactcanagcatttttaa-gagtgttccattgacatagaatc 881
            |||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1535 tttgttcaaagatgcaacaactcaaagcatttttaaggagtgttccattgacatagaatc 1594

                                                                        
Query: 882  tgtgaagcagcagatgctcgaattgagagggcatcacggatttgattcaagagacgctgn 941
            ||||||||||||||||||||||||||||||  ||||  || |||||||||||||||||| 
Sbjct: 1595 tgtgaagcagcagatgctcgaattgagaggcaatcaacgaattgattcaagagacgctga 1654

                                     
Query: 942  tncaaaatgaaaaatggggatattt 966
            | | |||||||||||||| ||||||
Sbjct: 1655 tac-aaatgaaaaatgggaatattt 1678


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7909
Number of Sequences: 1807
Number of extensions: 7909
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)