BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF08FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 1570 0.0
>3x_Contig1667
Length = 12071
Score = 1570 bits (792), Expect = 0.0
Identities = 858/873 (98%), Gaps = 7/873 (0%)
Strand = Plus / Plus
Query: 90 gatcatttcgcatacagtattctactacagttaaaagatctcacacaaacggaccagaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 gatcatttcgcatacagtattctactacagttaaaagatctcacacaaacggaccagaaa 3227
Query: 150 cctcatatactccaggaaacggatcactcaatggctaaggaacaggcgttagagagaatt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3228 cctcatatactccaggaaacggatcactcaatggctaaggaacaggcgttagagagaatt 3287
Query: 210 caaatgtatgatgatctattgctatgcattgataactatatggcgacggccaaatggcag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3288 caaatgtatgatgatctattgctatgcattgataactatatggcgacggccaaatggcag 3347
Query: 270 aaattatggcgtggaacccatttttgggtatccattttcttcattatcgcatccatggtg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3348 aaattatggcgtggaacccatttttgggtatccattttcttcattatcgcatccatggtg 3407
Query: 330 gtgacaactttcacatcaaatatagcaggttggtcttcaattttctggatcctgttctct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3408 gtgacaactttcacatcaaatatagcaggttggtcttcaattttctggatcctgttctct 3467
Query: 390 gtagcccttacagcatcaggattaatcgatggtttaatatcgctcttgtttggtaacaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3468 gtagcccttacagcatcaggattaatcgatggtttaatatcgctcttgtttggtaacaaa 3527
Query: 450 gaaatacgtgctttacaggaagtatacgaagaagtctcagatgcaaaacgtttcctatca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3528 gaaatacgtgctttacaggaagtatacgaagaagtctcagatgcaaaacgtttcctatca 3587
Query: 510 agtagtgtaaataattgataaattcctctttttaatttcaatataataatttgtttaatg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3588 agtagtgtaaataattgataaattcctctttttaatttcaatataataatttgtttaatg 3647
Query: 570 gctttcagcaacagctgttcgcattgatttttgtgttctactaaatcatagtgctaaaca 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3648 gctttcagcaacagctgttcgcattgatttttgtgttctactaaatcatagtgctaaaca 3707
Query: 630 ttgtcttgagtctcttttccattctgacatatttctgtgctgcttttgtcagtcttccat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3708 ttgtcttgagtctcttttccattctgacatatttctgtgctgcttttgtcagtcttccat 3767
Query: 690 ttgatgactctggttcgacaaaagtctctatcgcatgtgttttgatttccgggtaactta 749
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3768 ttgatgactctggttcgacaaaagtctctatcgcatgtg-tttgatttccgggtaactta 3826
Query: 750 ttaaaactctngttctattggttctgtggtatataagctatccttaaatcacgacgcacc 809
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 ttaaaactctgtttctattgtttctgtggtatataagctatccttaaatcacgacgcacc 3886
Query: 810 ttaataaaa-ataaagatgatattggcaaaaactcggtgcccagggggtaatttaatat- 867
||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3887 ttaataaaataaaaggatgatattggcaaaaactcggtgcccaggggttaatttaatata 3946
Query: 868 aacatttggntgctggtactttagta-gtgttggttttactttggaatg-aatgcaaagt 925
||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 3947 aacatttggttgctggtactttagtaggtgttggttttactttggaatgaaatgcaaagt 4006
Query: 926 --aaaatattgtttgttggtggttattttcaaa 956
||||||||||||||||||||| |||||||||
Sbjct: 4007 taaaaatattgtttgttggtggtaattttcaaa 4039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7374
Number of Sequences: 1807
Number of extensions: 7374
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)