BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF08RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1606 0.0
>3x_Contig1778
Length = 27694
Score = 1606 bits (810), Expect = 0.0
Identities = 903/924 (97%), Gaps = 10/924 (1%)
Strand = Plus / Minus
Query: 48 ttgttccggtattggagcttaactgaaataactgtatatgcaccagtgttctcctatcac 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 16110
Query: 108 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 16050
Query: 168 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16049 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 15990
Query: 228 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15989 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 15930
Query: 288 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 15870
Query: 348 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 15810
Query: 408 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 15750
Query: 468 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 15690
Query: 528 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15689 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 15630
Query: 588 gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctcag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15629 gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctcag 15570
Query: 648 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaatttctttccagagat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15569 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaatttctttccagagat 15510
Query: 708 gatgtccagagatgttataattcctgacttagaagcgacgancagctgctttgcanaacc 767
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 15509 gatgtccagagatgttataattcctgacttagaagcgacgacaagctgctttgcaaaacc 15450
Query: 768 aaatcgtacgtttagatctcgcagtgctgaagaatcatcttcagttatcanatcggncaa 827
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 15449 aaatcgtacgtttagatctcgcagtgctgaagaatcatcttcagttatcaaatcggcaaa 15390
Query: 828 cattctgcccagnattaaatcttttacnnggat-agatacgacttntagtctttcccaat 886
|||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 15389 cattctgcccag-attaaatcttttac--ggataagatacgactt-tagtctttcccaat 15334
Query: 887 tactttgnaacac-gnacttatatgtcgtcaatta-gctcaattgctgttcgtggagcaa 944
||||||| ||||| | ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 15333 tactttg-aacacggaacttatatg-cgtcaattaggctcaattgctgttcgtggagcag 15276
Query: 945 ttcat-tcttacaaagtctaaatt 967
||||| || ||||||||||||||
Sbjct: 15275 ttcatccctaacaaagtctaaatt 15252
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5429
Number of Sequences: 1807
Number of extensions: 5429
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)