BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZF12FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1398 0.0
>3x_Contig1543
Length = 9648
Score = 1398 bits (705), Expect = 0.0
Identities = 817/844 (96%), Gaps = 8/844 (0%)
Strand = Plus / Plus
Query: 86 tggttgaactataatttgacaggatagttaagaggattcctgaacatcacaataactttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 tggttgaactataatttgacaggatagttaagaggattcctgaacatcacaataactttg 4175
Query: 146 caatacttaaacacaaacacaacacaaacacactcactctctttatgaacaacacgctat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4176 caatacttaaacacaaacacaacacaaacacactcactctctttatgaacaacacgctat 4235
Query: 206 gattatatgggcttttttatgcatggccccttttcctcctccaggtggaactcctggcac 265
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4236 gattatatgggctctcttatgc-tggccccttttcctcctccaggtggaactcctggcac 4294
Query: 266 aatcgctttcacacattttctacatcgaagatagataagatacagcagtactttctgata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 aatcgctttcacacattttctacatcgaagatagataagatacagcagtactttctgata 4354
Query: 326 ttatatagaatatgtttatgatgtatacccccgccatggcgactttaacgatctcacatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 ttatatagaatatgtttatgatgtatacccccgccatggcgactttaacgatctcacatt 4414
Query: 386 ttgcattttttaattaacattttatttataagactcttccttcatcttatattggttaac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 ttgcattttttaattaacattttatttataagactcttccttcatcttatattggttaac 4474
Query: 446 ctagtcgtattcacatggatcttgatatccaaatcatcggtgctctcctcaatccgcttg 505
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 ctagtcgtgttcacatggatcttgatatccaaatcatcggtgctctcctcaatccgcttg 4534
Query: 506 atccgatcttgttgagaatctatctccttaccagtggtaatcgcaagtttctttaaccta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 atccgatcttgttgagaatctatctccttaccagtggtaatcgcaagtttctttaaccta 4594
Query: 566 ccactgatttgtccaatcttatccaagttcttgtcgatttccatttccattttcatcatc 625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4595 ccactgatttgtccaatcttatccaagttcttgtcgatttccatttcca-tttcatcatc 4653
Query: 626 ttcttcgtcgttctcgaactgatnacctttagccttctctaagatctgctggttctggta 685
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 4654 ttcttcgtcgttctcgaactgataccttttagccttctctaagatctgctggttctggta 4713
Query: 686 ccgatcacgaacttcagatggaccatgtccactcgacatggcattctcgatacgtttcgt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 ccgatcacgaacttcagatggaccatgtccactcgacatggcattctcgatacgtttcgt 4773
Query: 746 actttggtggaacgtcgacgtgatatcctctttggttttgtttggcctgcattctttg-a 804
||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||| |
Sbjct: 4774 actttggtgtaacgtcgacgtgatatcctc-ttggttttgtttgtcctgcatcctttgta 4832
Query: 805 accttatcttatttttcgcttcgcgtgcacgtctctttactatggaaacggattcgattc 864
|| ||||||||| || ||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct: 4833 actttatcttatcttccgcttcgcgtgcacgtctc-ttactatgg-aacggattcgatac 4890
Query: 865 atgcaccgcttaaatggttccggtttaacttctt-aattcacttactttattaatggcaa 923
||| |||||| |||| |||||||||||||||||| |||||||| ||||||| | |||||
Sbjct: 4891 atggaccgctaaaat-gttccggtttaacttcttcaattcactcactttatcatcggcaa 4949
Query: 924 ctct 927
||||
Sbjct: 4950 ctct 4953
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7101
Number of Sequences: 1807
Number of extensions: 7101
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)