BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1584 0.0
>3x_Contig1698
Length = 21001
Score = 1584 bits (799), Expect = 0.0
Identities = 857/867 (98%), Gaps = 7/867 (0%)
Strand = Plus / Minus
Query: 85 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3658 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 3599
Query: 145 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3598 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 3539
Query: 205 atgtggggactataacttggtataagggcctgtgccttggagcttctcaaatcccaaagt 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3538 atgtggggacta-aacttggtataagggcctgtgccttggagcttctcaaatcccaaagt 3480
Query: 265 cttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtata 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 cttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtata 3420
Query: 325 tcgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 tcgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattc 3360
Query: 385 aaatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 aaatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgt 3300
Query: 445 gtaaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 gtaaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaa 3240
Query: 505 cttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggcca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 cttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggcca 3180
Query: 565 tggtcatcaaatgtcactgaagttataggtcccaattctttatcagaaactctgaaggac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 tggtcatcaaatgtcactgaagttataggtcccaattctttatcagaaactctgaaggac 3120
Query: 625 ttcacaggctcaaatcgtagaagattgctcttggaaatgctaacagtcatatttcctttc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 ttcacaggctcaaatcgtagaagattgctcttggaaatgctaacagtcatatttcctttc 3060
Query: 685 tcagctaacttttagataatcacagaactgttgctaaaccgctggtgtcccgttgagctt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 tcagctaacttttagataatcacagaactgttgctaaaccgctggtgtcccgttgagctt 3000
Query: 745 ctctttttgtctccaaattggtaatatttcttgatggtgttaacagttttatttaaattt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ctctttttgtctccaaattggtaatatttcttgatggtgttaacagttttatttaaattt 2940
Query: 805 aaatgtt-ctcgaaa-tgtaatgacatctgtcaaagaaatc-atagtgttagtcacttgc 861
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2939 aaatgttcctcgaaattgtaatgacatctgtcaaagaaatcaatagtgttagtcacttgc 2880
Query: 862 aggtagagaaatagagcctttctggtcttactctggccttat-aaggactgacatatttg 920
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 2879 aggtagagaaatagagcctttctggtcttactctggctttataaagaactgacatatttg 2820
Query: 921 a-aattgtaataag-atcatgggtgta 945
| | |||||||||| ||||||||||||
Sbjct: 2819 agatttgtaataagaatcatgggtgta 2793
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6039
Number of Sequences: 1807
Number of extensions: 6039
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)