BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG02RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1746 0.0
>3x_Contig1758
Length = 25930
Score = 1746 bits (881), Expect = 0.0
Identities = 909/916 (99%), Gaps = 2/916 (0%)
Strand = Plus / Plus
Query: 48 tcgtatctaagatgtctgcttatactccaatgagctttagcaagtttgcaccttggagga 107
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 19195 tcgtatctaagatgtctgcaaatactccaatgagctttagcaagtttgcaccttggagga 19254
Query: 108 aacaatctgctagtccgaaacaaaaggcagttgtcaggcgactttttgataaagttatcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19255 aacaatctgctagtccgaaacaaaaggcagttgtcaggcgactttttgataaagttatcc 19314
Query: 168 gcacagaagagaaatatgcagatatggaggccaatgtagaagcatatctaaaaaccctag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19315 gcacagaagagaaatatgcagatatggaggccaatgtagaagcatatctaaaaaccctag 19374
Query: 228 acaagggagccgcatcatctattctttttgcgacttcacttgctccaaagtatccagtga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19375 acaagggagccgcatcatctattctttttgcgacttcacttgctccaaagtatccagtga 19434
Query: 288 agagaatattaaaactactatcgtggagacaagctcaaaagattcgtaacgaagacgtgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19435 agagaatattaaaactactatcgtggagacaagctcaaaagattcgtaacgaagacgtgt 19494
Query: 348 aaataactattaatttataatttgtatgaaaataatccccgaaaataagttgtaatactg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19495 aaataactattaatttataatttgtatgaaaataatccccgaaaataagttgtaatactg 19554
Query: 408 ctaaagaagctgataaccaagtcaaatcacagatcactttgctttctcttgtgcctgtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19555 ctaaagaagctgataaccaagtcaaatcacagatcactttgctttctcttgtgcctgtat 19614
Query: 468 acgcaatccttctatttactatttgccgtttcatgtactgtattgatattgggaaaaaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19615 acgcaatccttctatttactatttgccgtttcatgtactgtattgatattgggaaaaaga 19674
Query: 528 tattgcaagtaaaaatgaatcgattgatcaaaagagagaacgtgagagaataaatcccga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19675 tattgcaagtaaaaatgaatcgattgatcaaaagagagaacgtgagagaataaatcccga 19734
Query: 588 taggcaggtatgttactcggtaagaaactcagagactaaatcattgagatggtatctata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19735 taggcaggtatgttactcggtaagaaactcagagactaaatcattgagatggtatctata 19794
Query: 648 ctagccgtaccggggccattgaagacttttttcgataaattcccgttgaaaacattcgaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19795 ctagccgtaccggggccattgaagacttttttcgataaattcccgttgaaaacattcgaa 19854
Query: 708 tatgttaatgacgaagataaagctatggactaccaaatctcgcaacggagcgcatatttt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19855 tatgttaatgacgaagataaagctatggactaccaaatctcgcaacggagcgcatatttt 19914
Query: 768 gaaggtccagacgctgtacaatcgagcaaagacgatgttttccaattaggagtataccaa 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19915 gaaggtccagacgctgtacaatcgagcaaagacgatgttttccaattaggagtataccaa 19974
Query: 828 atagtacgagactcagaaactggggtcctcttggcgtctgatccatggggtttatttgcc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19975 atagtacgagactcagaaactggggtcctcttggcgtctgatccatggggtttatttgcc 20034
Query: 888 gaattatctctcagcagaaagaacaacct-anattacccagtgaaggattt-atgccaat 945
|||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||
Sbjct: 20035 gaattatctctcagcaagaagaacaacctaaaattacccagtgaaggatttaatgccaat 20094
Query: 946 ggtaccaatgctccaa 961
||||||||||||||||
Sbjct: 20095 ggtaccaatgctccaa 20110
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6411
Number of Sequences: 1807
Number of extensions: 6411
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)