BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG03RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1663 0.0
>3x_Contig1749
Length = 22923
Score = 1663 bits (839), Expect = 0.0
Identities = 894/909 (98%), Gaps = 3/909 (0%)
Strand = Plus / Minus
Query: 42 gcttggatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaa 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20461 gcttggatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaa 20402
Query: 102 agagccatcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20401 agagccatcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatgg 20342
Query: 162 tgttccttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcttttttttt 221
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 20341 tgttccttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagtttt 20282
Query: 222 cataaagctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgcc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20281 cataaagctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgcc 20222
Query: 282 ttagagatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20221 ttagagatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaac 20162
Query: 342 attcaaaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattggga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20161 attcaaaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattggga 20102
Query: 402 attactagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20101 attactagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcac 20042
Query: 462 gagggcgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20041 gagggcgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagc 19982
Query: 522 ttaataggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactcta 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19981 ttaataggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactcta 19922
Query: 582 tgcctgcgtccccacaggatctttggactctatgttctttctatggctcttggattttct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19921 tgcctgcgtccccacaggatctttggactctatgttctttctatggctcttggattttct 19862
Query: 642 ttttttccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttcc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19861 ttttttccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttcc 19802
Query: 702 agattctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggttt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19801 agattctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggttt 19742
Query: 762 gntcttcaatttgtccttcgatttagatttaga-tttgagtttgctttgggaaccacaac 820
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 19741 gttcttcaatttgtccttcgatttagatttagattttgagtttgctttgggaaccacaac 19682
Query: 821 tttttctgattcacgtagtaattcanaaccctctttttcagttttgttacacagggtttt 880
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 19681 tttttctgatccacgtagtaattcaaaaccctctttttcagttttgttacacagggtttt 19622
Query: 881 ggttaaaatcaaaagtaattggcttcggtagttgggtggtcattattagctcggtgaaat 940
|| |||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||| |
Sbjct: 19621 gg-taaaatcagaagt-atttgcttcggtagttgggtggtcattaatagctcgttgaagt 19564
Query: 941 tcctttaaa 949
|||||||||
Sbjct: 19563 tcctttaaa 19555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9220
Number of Sequences: 1807
Number of extensions: 9220
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)