BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1386 0.0
>3x_Contig1731
Length = 24233
Score = 1386 bits (699), Expect = 0.0
Identities = 819/842 (97%), Gaps = 14/842 (1%)
Strand = Plus / Minus
Query: 86 cgttgtaatctttttacagcagcttttacctgatgtttccttaacagagactagattata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8575 cgttgtaatctttttacagcagcttttacctgatgtttccttaacagagactagattata 8516
Query: 146 cgtattaaacacacttacagatttgattatccaaacaaaaccgcttgtgaataaacagtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8515 cgtattaaacacacttacagatttgattatccaaacaaaaccgcttgtgaataaacagtt 8456
Query: 206 cctaatgcagatacttgagattgtccctgagttttggcagcttgcttgtaatgaaccaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8455 cctaatgcagatacttgagattgtccctgagttttggcagcttgcttgtaatgaaccaac 8396
Query: 266 tgaatcaatactcgcaaatgttctacttcgcttgctgaggtatttatcgatttctttagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8395 tgaatcaatactcgcaaatgttctacttcgcttgctgaggtatttatcgatttctttagg 8336
Query: 326 gaaatattcttacgcaacctgggacatttcattaaccataatcgaggctgcctgcaaccc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8335 gaaatattcttacgcaacctgggacatttcattaaccataatcgaggctgcctgcaaccc 8276
Query: 386 aaactcaccacatacttcactacttctagaggatggtttagaactatggcactcacttct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8275 aaactcaccacatacttcactacttctagaggatggtttagaactatggcactcacttct 8216
Query: 446 acagaattacgatcctacggagaaatcacttgatgggagatttttgaacgctagcccatt 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8215 acagaattacgat-ctacggagaaatcacttgatgggagatttttgaacgctagcccatt 8157
Query: 506 cctacttcattgcgtggagaaccagacagaattgttgcctatttctttggagatcttaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8156 cctacttcattgcgtggagaaccagacagaattgttgcctatttctttggagatcttaaa 8097
Query: 566 aagttacgccattttgttgcccgcgcaggaattttattcctatcctgcttttactgaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8096 aagttacgccattttgttgcccgcgcaggaattttattcctatcctgcttttactgaaat 8037
Query: 626 cttaaaacatgctgcaagctacttgttacttttacgtgacgactcgtataccatactttt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8036 cttaaaacatgctgcaagctacttgttacttttacgtgacgactcgtataccatactttt 7977
Query: 686 ggaaatatgggatgttttggcactttcagatgaaggagaaaatgagatgtcattactatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7976 ggaaatatgggatgttttggcactttcagatgaaggagaaaatgagatgtcattactatt 7917
Query: 746 ctactttttcaacaatt-cgtttttcagagtattttc-atgcaattttcttac-agagc- 801
|||||||| ||||||| |||||| ||||||||||| ||||||||||||||| |||||
Sbjct: 7916 ctacttttcaaacaattccgttttcaagagtattttcaatgcaattttcttacaagagca 7857
Query: 802 attatctgcat-ttaagcgagtc-attgttccagata-tggcacgtatatcattca--tg 856
||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct: 7856 attatctgcatatcaagcgagtcaattgttccagatattggcacgtatatcattcaatgg 7797
Query: 857 cccccag-atatcataaa-ttaatgcctgattattt-aaaagtattgacgga-ctctgga 912
||| ||| |||||||||| ||| || |||||||||| ||||||||||||||| |||||||
Sbjct: 7796 cccacagaatatcataaatttattgtctgattatttaaaaagtattgacggacctctgga 7737
Query: 913 aa 914
||
Sbjct: 7736 aa 7735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5996
Number of Sequences: 1807
Number of extensions: 5996
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)