BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG04RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1493 0.0
3x_Contig50 115 2e-25
>3x_Contig1731
Length = 24233
Score = 1493 bits (753), Expect = 0.0
Identities = 875/905 (96%), Gaps = 8/905 (0%)
Strand = Plus / Plus
Query: 50 catgcattggaattgacacgtatattcctatgccgatggatcccaattcaatgcctctcg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3693 catgcattggaattgacacgtatattcctatgccgatggatcccaattcaatgcctctcg 3752
Query: 110 aacaaacggtacataacccaactggcattgcaacagcacgatgagttaattatataccta 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3753 aacaaacggtacataacccaactggcattgcaacagcacgatgagttaattatataccta 3812
Query: 170 ctacattcagaagtaacaactcctacgcaaaaatcttgcacctcgcttgatcgcccagtc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3813 ctacattcagaagtaacaactcctacgcaaaaatcttgcacctcgcttgatcgcccagtc 3872
Query: 230 acacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggcacagcatcggatcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3873 acacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggcacagcatcggatcc 3932
Query: 290 caggattcatgattaaacggttacttgcttacatacacttccaaatttaacttgctcttg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3933 caggattcatgattaaacggttacttgcttacatacacttccaaatttaacttgctcttg 3992
Query: 350 ctagcgaaattccattgatttcattaaagttctcagtattaattgcctttcagaacatcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3993 ctagcgaaattccattgatttcattaaagttctcagtattaattgcctttcagaacatcc 4052
Query: 410 ttcgaattatggaacatggaacaaaaaaaaaaagatccagtcctcctagtcatttatata 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4053 ttcgaattatggaacatggaacaaaaaaaaaaagatccagtcctcctagtcatttatata 4112
Query: 470 gaaaacagaatatatacagcagacagaaatcagtttctgaaattttaaggtatattgttt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gaaaacagaatatatacagcagacagaaatcagtttctgaaattttaaggtatattgttt 4172
Query: 530 acacagcacacggagcaaagcaacaactacacaagatatattttgggtagacccgcaata 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4173 acacagcacacggagcaaagcaacaactacacaagatatattttgggtagacccgcaata 4232
Query: 590 ggacacccaggacagttgtgtagtgggtatacagaatcaggttattgataaagagaatca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 ggacacccaggacagttgtgtagtgggtatacagaatcaggttattgataaagagaatca 4292
Query: 650 agaacgcctattttttgagagtcttaga-tatctagaagggatagagaagaaatttagag 708
||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||||
Sbjct: 4293 agaacgcctattttttgagagtc-tagattatctagaaggataagagaagaaattaagag 4351
Query: 709 ttcaagtattcggagaacagagaccatcgttagtctaaaattgatttagtccctaatttt 768
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 4352 ttcaagtattcggagaacagagaccatcgttagtctaaatttgatttagt-cctaatttt 4410
Query: 769 gatctcttttcgtactacattcatcatgaggatgcaaatgagttttgatttgttggcgag 828
||||| |||||||||||||||||||||||| |||||||||||| | || ||| | ||||
Sbjct: 4411 gatct-ttttcgtactacattcatcatgagaatgcaaatgagtatgaatatgtcgccgag 4469
Query: 829 cggggagcactgcaaccagcttaccaaagatggcatcacctgccatgtttaatttgaaac 888
| ||||||||||||||||||| ||||||||| |||||||||||||||| |||| || |||
Sbjct: 4470 c-gggagcactgcaaccagctcaccaaagattgcatcacctgccatgtctaatgtg-aac 4527
Query: 889 ggcagtaatggtgggcaaaaccgtaccacccggtggttttaacactaagtggcttaccag 948
||||||||||||||||| || |||||| |||||||||||||||||| |||| || |||
Sbjct: 4528 ggcagtaatggtgggcagcacggtacca-gcggtggttttaacactaa-tggcataacag 4585
Query: 949 gactg 953
|||||
Sbjct: 4586 gactg 4590
>3x_Contig50
Length = 999
Score = 115 bits (58), Expect = 2e-25
Identities = 138/162 (85%), Gaps = 2/162 (1%)
Strand = Plus / Minus
Query: 598 aggacagttgtgtagtgggtatacagaatcaggttattgataaagagaatcaagaacgcc 657
|||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct: 962 aggagagttgtgtagtgggtatagagaatgaggttattgataaagagaatgaagaagggg 903
Query: 658 tattttttgagagtcttaga-tatctagaagggatagagaagaaatttagagttcaagta 716
||| |||||||||| |||| ||| ||||||| |||||||||||| |||||| |||||
Sbjct: 902 tatgttttgagagt-gtagattatgtagaaggataagagaagaaattaagagttgaagta 844
Query: 717 ttcggagaacagagaccatcgttagtctaaaattgatttagt 758
|| |||||| ||||| || |||||| |||| ||||||||||
Sbjct: 843 ttgggagaagagagaggatggttagtgtaaatttgatttagt 802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,940
Number of Sequences: 1807
Number of extensions: 11940
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)