BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG06FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1689 1461 0.0
>3x_Contig1689
Length = 13711
Score = 1461 bits (737), Expect = 0.0
Identities = 791/801 (98%), Gaps = 6/801 (0%)
Strand = Plus / Plus
Query: 87 aatgattgttgaaccaaccgagatatagtctgtgcagtaaccgtttcagatcccgaatca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 aatgattgttgaaccaaccgagatatagtctgtgcagtaaccgtttcagatcccgaatca 2586
Query: 147 atagtgctagataggcttgggataggcttggaagtattatccatagtgatgatattgcgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2587 atagtgctagataggcttgggataggcttggaagtattatccatagtgatgatattgcgc 2646
Query: 207 agtagtaacccaatattgtaccataggaagtaatttcgttgtgccaatctttcagtggtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2647 agtagtaacccaatattgtaccataggaagtaatttcgttgtgccaatctttcagtggtt 2706
Query: 267 caagtgtttgttctgaatatcttttgtaactatttacatatccaatctttgttattgtta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 caagtgtttgttctgaatatcttttgtaactatttacatatccaatctttgttattgtta 2766
Query: 327 cccgcaacacgtcgggtgtacaactcttaacgtattctgaagtataatatgttctacatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2767 cccgcaacacgtcgggtgtacaactcttaacgtattctgaagtataatatgttctacatt 2826
Query: 387 atattatataaaacaatgttctatatgtggcagcatgccgatacttgccaatagtacgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 atattatataaaacaatgttctatatgtggcagcatgccgatacttgccaatagtacgat 2886
Query: 447 catgagaaatgctcgccatgctttctcaaagatgcattatgatacaatgggtacacatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 catgagaaatgctcgccatgctttctcaaagatgcattatgatacaatgggtacacatca 2946
Query: 507 ccagcttcgacattcgcgattaagtctgatttcaatgttgatcttatcgtattcatcaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2947 ccagcttcgacattcgcgattaagtctgatttcaatgttgatcttatcgtattcatcaat 3006
Query: 567 tgagagttagtatctttctgttcaatgaacacatcaccctcgagtaagagtagtttcact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 tgagagttagtatctttctgttcaatgaacacatcaccctcgagtaagagtagtttcact 3066
Query: 627 aaatcacaatcttggttgtctctgttgtctaacgaaatgcataatgtattgacatccaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 aaatcacaatcttggttgtctctgttgtctaacgaaatgcataatgtattgacatccaaa 3126
Query: 687 gcactggtcaaagatacaattttttcatcgaattctaaagtttgatgcaatgataaagca 746
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3127 gcactggtcaaagatacaattttttcatcgaattctaaagtttgatgcaaagataaagca 3186
Query: 747 ccagattttttcatccactttcagcacaaacagtacccttggtagcttccacgaaaaatg 806
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3187 ccaga-tttttcatccactttcagcacaaacagta-ccttggtagcttccacgaaaaatg 3244
Query: 807 caatattatgggacatccttttaatgtgactatttttagcaacactgtattcaatcccat 866
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 3245 caata-tatgggacat-cttttaatgtgacta-ttttagcaacactgtattcaatcacat 3301
Query: 867 cgtctattcttattttggaat 887
|| || |||| ||||||||||
Sbjct: 3302 cgcct-ttctcattttggaat 3321
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7286
Number of Sequences: 1807
Number of extensions: 7286
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)