BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG06RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 1673 0.0
>3x_Contig1703
Length = 17919
Score = 1673 bits (844), Expect = 0.0
Identities = 894/907 (98%), Gaps = 3/907 (0%)
Strand = Plus / Minus
Query: 39 tcacacttcacgtatgggcattcgtgttagatcaatttgacacaaaggggaaagggtttt 98
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5636 tcacacttcacgtatgggcattcgtgtgagatcaatttgacacaaaggggaaagggtttt 5577
Query: 99 gctacttgcgacaggaggtatggagaagtgtgtaactgattcatcatggaccaagatgag 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5576 gctacttgcgacaggaggtatggagaagtgtgtaactgattcatcatggaccaagatgag 5517
Query: 159 gagccggaattcacacgcattctatggtgtcttctatgtcagggtccagtagatcttact 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5516 gagccggaattcacacgcattctatggtgtcttctatgtcagggtccagtagatcttact 5457
Query: 219 cctttcgtaatgtggctagctattacgtttgctcatgacaggaaaacgacagaaagcttt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 cctttcgtaatgtggctagctattacgtttgctcatgacaggaaaacgacagaaagcttt 5397
Query: 279 cgtttttcttttctttcgttactaagtgcgcttttagttgcacttagtaaagaatttaaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 cgtttttcttttctttcgttactaagtgcgcttttagttgcacttagtaaagaatttaaa 5337
Query: 339 attgtctatagagctagagaggttacctgcaaaatggtggattcaatttctctggttatg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 attgtctatagagctagagaggttacctgcaaaatggtggattcaatttctctggttatg 5277
Query: 399 ccactgtatttgattccttcggaaataacttatcttttagtaaccagcgacagatgagca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 ccactgtatttgattccttcggaaataacttatcttttagtaaccagcgacagatgagca 5217
Query: 459 gcggcatacatttcgtgcgaaacgaaaaagaaaattgtttcctctcgagtgatgcggatt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 gcggcatacatttcgtgcgaaacgaaaaagaaaattgtttcctctcgagtgatgcggatt 5157
Query: 519 tgtgtagggaagaaaaagatgtagccagaaaacactgcaatgcacgaggtggcctatatt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 tgtgtagggaagaaaaagatgtagccagaaaacactgcaatgcacgaggtggcctatatt 5097
Query: 579 ttttttcacttaaatggttacaggcctgaaaaaagtttcaactgcaaaggttacagatct 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 ttttttcacttaaatggttacaggcctgaaaaaagtttcaactgcaaaggttacagatct 5037
Query: 639 gagggtgggggagaaatcggacctgagatgtcagatcggaacttcttcttcttccctctg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 gagggtgggggagaaatcggacctgagatgtcagatcggaacttcttcttcttccctctg 4977
Query: 699 tttctcagtgagagcggggtagatagttgataaatcactaacgggtttttctgtttccat 758
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4976 tttctcagtgagagcggggtagatagttgataaatcactaac-ggtttttctgtttccat 4918
Query: 759 tgaataaaatagtattaaaaacgnttataaagaacatatttcaagagtacttagtgattt 818
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 4917 tgaataaaatagtattaaaaacgttataaaagaacatatttcaagagtacttagtgattt 4858
Query: 819 tgaaagtgtgcaattttggataaaattaagacaagccagttagtatctgctaaagat-aa 877
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4857 tgaaagtgtgcaatgttggataaaattaagacaagccagttagtatctgctaaagataaa 4798
Query: 878 attcattctgacgaattttacacaccagttgttagttgattgtacgtc-attgttcttgt 936
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4797 attcattctgacgaattttacacaccagttgtagtttgattgtacgtcaattgttcttgt 4738
Query: 937 acccgaa 943
|| ||||
Sbjct: 4737 acgcgaa 4731
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8610
Number of Sequences: 1807
Number of extensions: 8610
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)