BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG07FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1469 0.0
>3x_Contig1529
Length = 11812
Score = 1469 bits (741), Expect = 0.0
Identities = 819/836 (97%), Gaps = 7/836 (0%)
Strand = Plus / Plus
Query: 89 ataccttcatgaattatttgcacaacgtgactctccaaatatatcccgaagaagtttttg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 ataccttcatgaattatttgcacaacgtgactctccaaatatatcccgaagaagtttttg 2554
Query: 149 cagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttcga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 cagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttcga 2614
Query: 209 tctcacagaaacttggttcatcacaaccgctcaattctcagcgtatcagctataatatat 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2615 tctcacagaaactcggttcatcacaaccgctcaattctcagcgtatcagctataatatat 2674
Query: 269 gtggtttacaaagtgttttgaccgaaaaggatatactatctgctaacctcgaaattacta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 gtggtttacaaagtgttttgaccgaaaaggatatactatctgctaacctcgaaattacta 2734
Query: 329 cgaagtgggtacaagatttgactgaggttgggcctaattaccaccgcctcttgatccgaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 cgaagtgggtacaagatttgactgaggttgggcctaattaccaccgcctcttgatccgaa 2794
Query: 389 tgatggatttcattcttcaacagcgcaagcctataatgagccgccaatacgcatttgaat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2795 tgatggatttcattcttcaacagcgcaagcctataatgagccgccaatacgcatttgaat 2854
Query: 449 tggactctaaaaatactattaaattcatgagactgatggtgaaacacattcttacttatt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2855 tggactctaaaaatactattaaattcatgagactgatggtgaaacacattcttacttatt 2914
Query: 509 ttccaggcactaccaacattggagatgtgttgggtaaaaaagcatacaacatgactgaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2915 ttccaggcactaccaacattggagatgtgttgggtaaaaaagcatacaacatgactgaaa 2974
Query: 569 aagaaagaagatggctaacgaaaataggagtattcttgaagaacactcgacaatttcaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 aagaaagaagatggctaacgaaaataggagtattcttgaagaacactcgacaatttcaac 3034
Query: 629 cattttctgcttcgtattttgagcaatacgttataaaagaaatcattcgagataatctta 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3035 cattttctgcttcgtattttgagcaatacgttataaaagaaatcattcgagataatctaa 3094
Query: 689 ccatagatctagtcaaatctattttagttgggcagaaactagaacttgacgctcccctcg 748
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3095 ccatagatctagtcaaatctattttagttggcaagaaactagaacttgacgctcccctcg 3154
Query: 749 ctcgcttttacatagtaatgcagcaggatgctgggacactaaat-atattaacaggatgt 807
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3155 ctcgcttttacatagtaatgcagcaggatgctgggacactaaataatattaacaggatgt 3214
Query: 808 tcagtcattttgtcattaaagattacgagaaaccataggaaggacgatattcttcttacc 867
||||||| ||||||||||||||| ||||||||| |||||||| |||||| || |||||||
Sbjct: 3215 tcagtca-tttgtcattaaagataacgagaaacaataggaagaacgata-tcatcttacc 3272
Query: 868 agccaaaatattttcctaataatttactccanaaaattcggccaaaacttcctttt 923
||| |||||| ||||||||| ||||||| || ||||||||| ||||||||||||||
Sbjct: 3273 agcaaaaata-tttcctaat-atttact-cagaaaattcgg-caaaacttcctttt 3324
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6830
Number of Sequences: 1807
Number of extensions: 6830
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)