BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG07RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1221 0.0
3x_Contig659 139 1e-32
>3x_Contig1764
Length = 22510
Score = 1221 bits (616), Expect = 0.0
Identities = 652/660 (98%), Gaps = 3/660 (0%)
Strand = Plus / Plus
Query: 45 cttgactgtaagcattttctgactattctagtagtaacattatttattcagtattactta 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 21851 cttgactgtaagcattttctgacgattctagtagtaacattatttattcagtattactta 21910
Query: 105 taaagcatcattttcacttgaattttcattattgattagtatataccatatcatagtcaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21911 taaagcatcattttcacttgaattttcattattgattagtatataccatatcatagtcaa 21970
Query: 165 cttttagtttagccgctagctcctgcaaagtcatttcatcattatcttctttccttagtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21971 cttttagtttagccgctagctcctgcaaagtcatttcatcattatcttctttccttagtt 22030
Query: 225 cattctcaaatttctggagttcgttctgtttcatttcttctgcttctctcactttctcat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22031 cattctcaaatttctggagttcgttctgtttcatttcttctgcttctctcactttctcat 22090
Query: 285 ccatccgttccctgatttcttccttttcttcaattggcaaatgaaagaagtccggagatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091 ccatccgttccctgatttcttccttttcttcaattggcaaatgaaagaagtccggagatt 22150
Query: 345 ccaagatctcttccatttgttgttgaatgccgtcatcgtattgatactcaacttggcgct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22151 ccaagatctcttccatttgttgttgaatgccgtcatcgtattgatactcaacttggcgct 22210
Query: 405 ttcttgcctctatttctttccgcttatactcttgataaccgcccattcgatcaattttaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22211 ttcttgcctctatttctttccgcttatactcttgataaccgcccattcgatcaattttaa 22270
Query: 465 ccaatatggtattcaacatgtaagacatcccacattgacatatagacctccatttattta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22271 ccaatatggtattcaacatgtaagacatcccacattgacatatagacctccatttattta 22330
Query: 525 ttaattcgatagtcttgagttcgttgtcgtaagtttgcattattttcactgcccttttca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22331 ttaattcgatagtcttgagttcgttgtcgtaagtttgcattattttcactgcccttttca 22390
Query: 585 aagc-aactctttcttcgtaagatctcgtatttgtcgatcaagattcgtctct-acctcc 642
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 22391 aagcaaactctttcttcgtaagatctcgtatttgtcgatcaagatcgttctctaacctcc 22450
Query: 643 ggatctccttt-aaagtaacacactacccgtagatctttcttcaggttttctgcaagata 701
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 22451 ggatctcctttaaaagtaacacactacccgtagatctttcttcagggtttctgcaagata 22510
>3x_Contig659
Length = 2715
Score = 139 bits (70), Expect = 1e-32
Identities = 114/125 (91%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 744 aggttggttcactatcaccttca-aatttatgacattcgacataacgcctgtnatgagtc 802
|||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct: 2711 aggttgtttcactatcaccttcanaattcatgacattcgacataacgcctgtaatgagta 2652
Query: 803 ctggtataag-attattccacttgggtcaggtatgccttaccgcagattgtactcccgag 861
|||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 2651 ctggtataagaattattccacttggtcaagttatgcc-taccgcagattgtactcccgag 2593
Query: 862 ctttg 866
|||||
Sbjct: 2592 ctttg 2588
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8589
Number of Sequences: 1807
Number of extensions: 8589
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)