BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG09FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1197 0.0
>3x_Contig1527
Length = 8131
Score = 1197 bits (604), Expect = 0.0
Identities = 659/671 (98%), Gaps = 5/671 (0%)
Strand = Plus / Minus
Query: 86 ctgggttatcaatagcacaagcaataaccttggagttgaaaatatcgaactcactagcgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6153 ctgggttatcaatagcacaagcaataaccttggagttgaaaatatcgaactcactagcgt 6094
Query: 146 cggttggggcttgtttaacatcctcggcatcctttgctgactcggcaggagtaactggag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6093 cggttggggcttgtttaacatcctcggcatcctttgctgactcggcaggagtaactggag 6034
Query: 206 tgactggttgagtgtcatcaatttttagggatgctacgctgtttacgatagattcttcac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6033 tgactggttgagtgtcatcaatttttagggatgctacgctgtttacgatagattcttcac 5974
Query: 266 tagatggagctggagaaacttctttgaaagcctccacagccggtgtcacactttggtcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973 tagatggagctggagaaacttctttgaaagcctccacagccggtgtcacactttggtcat 5914
Query: 326 tgacactggctttatgaggaatgtaaactgggcggttaagtttagaaagatcaacaacac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913 tgacactggctttatgaggaatgtaaactgggcggttaagtttagaaagatcaacaacac 5854
Query: 386 tattagcagcttgttctgcaacagacttatcgatagtaaattgaattgcagcagatgcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5853 tattagcagcttgttctgcaacagacttatcgatagtaaattgaattgcagcagatgcag 5794
Query: 446 cttgtgttcttaggtagtacataccagtcttcaaaccctttttccatccgtagaaatgca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5793 cttgtgttcttaggtagtacataccagtcttcaaaccctttttccatccgtagaaatgca 5734
Query: 506 tggaagttaacttacccatggttggtgcacgaatatggatatttaaggattgagattgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5733 tggaagttaacttacccatggttggtgcacgaatatggatatttaaggattgagattgat 5674
Query: 566 caatgttagcagcacggtcggccgncatgtcgataatatgcttttgagac-attcccaaa 624
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 5673 caatgtaagcagcacggtcggccgccatgtcgataatatgcttttgagacaattcccaaa 5614
Query: 625 cagtcttgtataggtccttcaattcttgtgggatatttggtaagttcttgatggaaccat 684
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5613 cagtcttgtataggtccttcaattcttgtgggatatttggtaagttctgaatggaaccat 5554
Query: 685 tgtcggcaataatattgaga-ttcatagctttattcccaaattccccaattcaaccaagt 743
|||||||||||||| ||||| |||||||||| | ||||||| | ||||| ||||||||||
Sbjct: 5553 tgtcggcaataata-tgagatttcatagcttca-tcccaaa-tacccaagtcaaccaagt 5497
Query: 744 catgcaataag 754
|||||||||||
Sbjct: 5496 catgcaataag 5486
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6398
Number of Sequences: 1807
Number of extensions: 6398
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)