BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG09RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1542 0.0
>3x_Contig1224
Length = 5948
Score = 1542 bits (778), Expect = 0.0
Identities = 868/889 (97%), Gaps = 7/889 (0%)
Strand = Plus / Plus
Query: 64 taagccgactgaacataaatttgcatctgaagagtcaaattgactccagttttcagtgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3915 taagccgactgaacataaatttgcatctgaagagtcaaattgactccagttttcagtgaa 3974
Query: 124 agggttgatactatcacaagaacctacattactgttcaaattccagtcagtactgttgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3975 agggttgatactatcacaagaacctacattactgttcaaattccagtcagtactgttgca 4034
Query: 184 tccgcctattcggctaccagtaccgaaattatgactattaatacctcttgttttaggtga 243
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 4035 tccgcctattcggctaccagtaccgaaatcaggactattaatacctcttgttttaggtga 4094
Query: 244 atatgctcgtgtaatgtaacagaatatggtgtcgattttggataatggtacaatagatag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 atatgctcgtgtaatgtaacagaatatggtgtcgattttggataatggtacaatagatag 4154
Query: 304 aaaaattgttgttacaatggacactgtcaatgaaataaatgaaattatagtcaaaatatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4155 aaaaattgttgttacaatggacactgtcaatgaaataaatgaaattatagtcaaaatatt 4214
Query: 364 ctcattaataagtcttttcctcgatatatgaaaaagcgacaaaatacctgatggcggtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4215 ctcattaataagtcttttcctcgatatatgaaaaagcgacaaaatacctgatggcggtat 4274
Query: 424 tatgtttaaaagaagcatgaaaattagtataaataatcttgattttgtgggttttcggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4275 tatgtttaaaagaagcatgaaaattagtataaataatcttgattttgtgggttttcggag 4334
Query: 484 atttgaatcgcgtgggacaaaaaacatttcaccaataatcgcagatatggtaatcaagca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4335 atttgaatcgcgtgggacaaaaaacatttcaccaataatcgcagatatggtaatcaagca 4394
Query: 544 cgagaatgtacctgccaacgacataactgagaataaaacgaataactcagggtcattgtc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 cgagaatgtacctgccaacgacataactgagaataaaacgaataactcagggtcattgtc 4454
Query: 604 caaagtttgtatataatgttttgtgaacaacggttttaggtttataacagaaaaatacca 663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4455 caaagtttgtatataatgttttgtgaacaacggttttaggtttatcacagaaaaatacca 4514
Query: 664 aaaagtggcaacgtgaatggtccaaattctatggaaattcgtgatcaaatggtaccaagt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4515 aaaagtggcaacgtgaatggtccaaattctatggaaattcgtgatcaaatggtaccaagt 4574
Query: 724 acgtgattcaatataggttttccgtaaggattttgaccattcaatctgtgtgaactttag 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4575 acgtgattcaatataggttttccgtaaggattttgaccattcaatctgtgtgaac-ttag 4633
Query: 784 aata-ttcatattccgcggtagatcggcatagttggta-catctttcaatttaaactggt 841
|||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4634 aatatttcatatcccgcggtagatcggcatagttggtaccatctttcaatttaaactggt 4693
Query: 842 taattgtttttttatgaccagaaacattngataatatcggcgtatcctataatattggaa 901
||| || ||||| ||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 4694 taa-tggtttttaatgaccagaaacattgattaatatcgtcgtatcctataatatgggaa 4752
Query: 902 tgggtcgttctttttattcccagttnatttgaaattgaacaaaattcat 950
| ||||||| ||||||||| |||| ||||||||||| |||||||||||
Sbjct: 4753 t-ggtcgttacttttattccaagtt-atttgaaattg-acaaaattcat 4798
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7829
Number of Sequences: 1807
Number of extensions: 7829
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)