BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZG10RM1.SCF screened BAC_end
         (996 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1712                                                        1304   0.0  

>3x_Contig1712 
          Length = 23668

 Score = 1304 bits (658), Expect = 0.0
 Identities = 712/724 (98%), Gaps = 6/724 (0%)
 Strand = Plus / Minus

                                                                         
Query: 52    gcttgagagatttgacctccaat--caacgtcgtttacatcattgatgaagttcaaactg 109
             ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 11489 gcttgagagatttgacctccaaatacaacgtcgtttacatcattgatgaagttcaaactg 11430

                                                                         
Query: 110   gtgtcggtgctactggtaagttctggtgccacgaatgggctgacattcaaccaccagttg 169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11429 gtgtcggtgctactggtaagttctggtgccacgaatgggctgacattcaaccaccagttg 11370

                                                                         
Query: 170   atttggtcactttctccaagaagttccaatccgctggttactggttccacgatgacagat 229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11369 atttggtcactttctccaagaagttccaatccgctggttactggttccacgatgacagat 11310

                                                                         
Query: 230   tcattcctaataaggcttacagacaattcaacacctggtgtggtgatccagctagaatga 289
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11309 tcattcctaataaggcttacagacaattcaacacctggtgtggtgatccagctagaatga 11250

                                                                         
Query: 290   ttattgctggtgccattggtcaagaaatcgtagacaacaacttggtagatcaatgtgctc 349
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11249 ttattgctggtgccattggtcaagaaatcgtagacaacaacttggtagatcaatgtgctc 11190

                                                                         
Query: 350   gtgtcggtgattacttgttcgaaaagttggaaaaattgcaagcaaaatacccaaccagat 409
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11189 gtgtcggtgattacttgttcgaaaagttggaaaaattgcaagcaaaatacccaaccagat 11130

                                                                         
Query: 410   tgatcaacttgagaggtaagaaccgtggtacatttatcgcttttgatttggaaacttcgg 469
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11129 tgatcaacttgagaggtaagaaccgtggtacatttatcgcttttgatttggaaacttcgg 11070

                                                                         
Query: 470   ctgaaagagaccagctattgaagctcttgaagagcaatggctgcaacgtcggtggttgtg 529
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11069 ctgaaagagaccagctattgaagctcttgaagagcaatggctgcaacgtcggtggttgtg 11010

                                                                         
Query: 530   ctgaaaagtctgttagactaagaccatccttaactttcgaagaaaagcatgctgacatct 589
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11009 ctgaaaagtctgttagactaagaccatccttaactttcgaagaaaagcatgctgacatct 10950

                                                                         
Query: 590   ttgtcgatgctntggaaaagtctattggccaactataaaatactgttctttcagttcctc 649
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10949 ttgtcgatgctttggaaaagtctattggccaactataaaatactgttctttcagttcctc 10890

                                                                         
Query: 650   atcagaacatgtatcaaaccccacacgattagtgtattcttacgtaaatagaagttattt 709
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10889 atcagaacatgtatcaaaccccacacgattagtgtattcttacgtaaatagaagttattt 10830

                                                                         
Query: 710   ataagaaacgccctcatattattataaaatgtgactattattatttatgacagaaacgga 769
             ||||| |||| ||||||| |  |||||||||||||||| |||| ||||||||| ||||||
Sbjct: 10829 ataag-aacg-cctcataattatataaaatgtgactataatta-ttatgacag-aacgga 10774

                 
Query: 770   tttt 773
             ||||
Sbjct: 10773 tttt 10770


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7550
Number of Sequences: 1807
Number of extensions: 7550
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)