BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG11RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1651 0.0
>3x_Contig1588
Length = 14692
Score = 1651 bits (833), Expect = 0.0
Identities = 892/907 (98%), Gaps = 6/907 (0%)
Strand = Plus / Plus
Query: 39 agcttctaaacc-ggatatatctatatggatt-aatggggttcggaatggggtgttcctg 96
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5728 agcttctaaaccaggatatatctatatggattcaatggggttcggaatggggtgttcctg 5787
Query: 97 tttgcaattgactttccaggctcctaatatcaataaggcacgttatttgtacgatacttt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5788 tttgcaattgactttccaggctcctaatatcaataaggcacgttatttgtacgatacttt 5847
Query: 157 gttgaattttgcgccaattttcttggccgcaactgctgcctctccagtattcaaggggtt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5848 gttgaattttgcgccaattttcttggccgcaactgctgcctctccagtattcaaggggtt 5907
Query: 217 ccttgcagatcaagacgtgcgttggaacgttatcgtaggtgcagttgatgatcgtactcc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5908 ccttgcagatcaagacgtgcgttggaacgttatcgtaggtgcagttgatgatcgtactcc 5967
Query: 277 atatgaaagatcagtggagccattgctacccaagtataataacgggtatggtggtatcgc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5968 atatgaaagatcagtggagccattgctacccaagtataataacgggtatggtggtatcgc 6027
Query: 337 aactgaagattatgcttcaacggcacggatcaataaatcaaggtatagtgtagtggattt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6028 aactgaagattatgcttcaacggcacggatcaataaatcaaggtatagtgtagtggattt 6087
Query: 397 gtacctcggtggtaacgagttctatgactccaagttcaacgacactgaggttcctatcaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 gtacctcggtggtaacgagttctatgactccaagttcaacgacactgaggttcctatcaa 6147
Query: 457 tgagaaagtattcaagagattggtagataacgaaaagttcaaacttgataaagacttggc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6148 tgagaaagtattcaagagattggtagataacgaaaagttcaaacttgataaagacttggc 6207
Query: 517 tcgccatttcgcccatcttttcatcagagatccactggtcatcttcgaagaaaggattga 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6208 tcgccatttcgcccatcttttcatcagagatccactggtcatcttcgaagaaaggattga 6267
Query: 577 ccaggataacgaaacagaaactgaccatttcgaaaatatccaaagtactaattggcaatc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6268 ccaggataacgaaacagaaactgaccatttcgaaaatatccaaagtactaattggcaatc 6327
Query: 637 ggtccggtttaaggtcccttcacaaagtgcgaccccagataataaaggagctcctggttg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6328 ggtccggtttaaggtcccttcacaaagtgcgaccccagataataaaggagctcctggttg 6387
Query: 697 gagggtcgaattcagacccatggaagttcaattgacagatttcgaaaatgctgcatattc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6388 gagggtcgaattcagacccatggaagttcaattgacagatttcgaaaatgctgcatattc 6447
Query: 757 caatctcattttatttgntggtagaatctattcttaccttcgacgatnagattaatgctt 816
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6448 caatctca-tttatttgttggtagaatctattcttaccttcgacgataagattaatgctt 6506
Query: 817 acatgtacatgtctgaaatttgg-aaaacatgnaaactgctcatcatcgtgacgctactt 875
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 6507 acatgtacatgtctgaaatttggaaaaacatggaaactgctcatcatcgtgacgctactt 6566
Query: 876 tgaaaggaanaagttctattggaaatccgacttttctgaccttcaaggaaaaacanaact 935
|||| | | ||||||||||||||||||||||| |||||||||||||| || ||| ||||
Sbjct: 6567 tgaa--ggagaagttctattggaaatccgacttctctgaccttcaaggtaagacagaact 6624
Query: 936 gctaagt 942
|||||||
Sbjct: 6625 gctaagt 6631
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6358
Number of Sequences: 1807
Number of extensions: 6358
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)