BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG12FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1374 0.0
>3x_Contig1295
Length = 7117
Score = 1374 bits (693), Expect = 0.0
Identities = 818/848 (96%), Gaps = 10/848 (1%)
Strand = Plus / Plus
Query: 89 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 350
Query: 149 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 410
Query: 209 cgaagactatttttccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 268
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 470
Query: 269 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 530
Query: 329 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 590
Query: 389 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 650
Query: 449 tttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaaca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaaca 710
Query: 509 aagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggtc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggtc 770
Query: 569 ctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagtaag 830
Query: 629 tagatatatatatgtacgtcttttttcggcattgtagagcatttgcttgaagcttatcag 688
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 831 tagatatatatatgtacgtcttttttcggcattgtagagcatctgctgtaagcttatcag 890
Query: 689 ctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcattaactt 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 891 ctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcattaac-t 949
Query: 749 tcgcctcgctcctaatgtaaagatttattccctaagaaat-ataagggatgataagtgaa 807
|||||||||||||||||||||||| || | |||||||||| |||||| ||||||||||||
Sbjct: 950 tcgcctcgctcctaatgtaaagatata-tacctaagaaataataaggaatgataagtgaa 1008
Query: 808 ttttatcc-aaaacctggtccaactatttctcaacctagttttccttcactgtgtgaagt 866
| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 1009 -tctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtgtg-agt 1066
Query: 867 cacacttttttacccaattcccctttgttaagttacatttcttttttaag-gtcactatc 925
|||||| || |||| ||| ||| | || ||||||||| |||||||| || |||||||||
Sbjct: 1067 cacactattataccaaatacccatatg-taagttaca--tcttttttcagtgtcactatc 1123
Query: 926 aaaactcc 933
||||||||
Sbjct: 1124 aaaactcc 1131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7319
Number of Sequences: 1807
Number of extensions: 7319
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)