BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZG12RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1669 0.0
>3x_Contig1340
Length = 7156
Score = 1669 bits (842), Expect = 0.0
Identities = 873/881 (99%), Gaps = 2/881 (0%)
Strand = Plus / Plus
Query: 61 ggcagaaattaaaatatccgggtaacgaaatatttatttcattaaaatcgatatactatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4740 ggcagaaattaaaatatccgggtaacgaaatatttatttcattaaaatcgatatactatt 4799
Query: 121 tacttataatatacgtatagtttagtggtatagatctatggtacagtggtgggtgtggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4800 tacttataatatacgtatagtttagtggtatagatctatggtacagtggtgggtgtggta 4859
Query: 181 ataataatgatatcaaatcattaattc-ctagttcctttttcaattccttggtgaaatca 239
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4860 ataataatgatatcaaatcattaattctctagctcctttttcaattccttggtgaaatca 4919
Query: 240 tcctctacttcgatatcgtcccagtcttcagcccaaaggtttgaatcttttgttagatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4920 tcctctacttcgatatcgtcccagtcttcagcccaaaggtttgaatcttttgttagatct 4979
Query: 300 tgtgaaacaggttgcgatggccaagaatcagctgggaaatcctcgaattcatcgtcatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4980 tgtgaaacaggttgcgatggccaagaatcagctgggaaatcctcgaattcatcgtcatcc 5039
Query: 360 tcaagagaagattttcttggttctttatttgacatcttttcgcttgtacaacgctgatgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5040 tcaagagaagattttcttggttctttatttgacatcttttcgcttgtacaacgctgatgt 5099
Query: 420 atcaggtcaaagtgtatatcaggggctgtatatatcttgagtgaatctatatgtagtatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5100 atcaggtcaaagtgtatatcaggggctgtatatatcttgagtgaatctatatgtagtatt 5159
Query: 480 acttataaggtttgccactatttcagacctttttgtagcttttggatgattgtttattgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5160 acttataaggtttgccactatttcagacctttttgtagcttttggatgattgtttattgg 5219
Query: 540 tccgggtaatgaaacggctttgacagcataaaagacaggacacattgaggccaaacgcaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 tccgggtaatgaaacggctttgacagcataaaagacaggacacattgaggccaaacgcaa 5279
Query: 600 agggtggtaaatcgttgtgcagagtgtattaatgcatcgcctcagtacaatatatcccaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 agggtggtaaatcgttgtgcagagtgtattaatgcatcgcctcagtacaatatatcccaa 5339
Query: 660 aaattagggaccgtcaaatcacctagctctctgtaatccatgtgttagccttttctatga 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 aaattagggaccgtcaaatcacctagctctctgtaatccatgtgttagccttttctatga 5399
Query: 720 tttatagttgtcacccacacaccacacgtttaatattcaattgtaaaagaaaaaaagttt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5400 tttatagttgtcacccacacaccacacgtttaatattcaattgtaaaagaaaaaaagttt 5459
Query: 780 gaaaaaattctggatcagaagaattggaaagaaatccacgatgagcttnaagctgtctat 839
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5460 gaaaaaattctggatcagaagaattggaaagaaatccacgatgagcttaaagctgtctaa 5519
Query: 840 ttcaattgattc-atgaggctacatatttgatattctattcatccggttgattttgttgg 898
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 ttcaattgattcaatgaggctacatatttgatattctattcatccggttgattttgttgg 5579
Query: 899 cagtcagtgttggcaatcaatttttactcaatcttgctaga 939
|||||||||| | |||||||||||||||||||||||||||
Sbjct: 5580 cagtcagtgtggcaaatcaatttttactcaatcttgctaga 5620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9448
Number of Sequences: 1807
Number of extensions: 9448
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)