BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH01RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 1532 0.0
>3x_Contig1068
Length = 5568
Score = 1532 bits (773), Expect = 0.0
Identities = 875/893 (97%), Gaps = 12/893 (1%)
Strand = Plus / Minus
Query: 48 tggttctcgtatgatgaatatgtagatagtatacccttaacacatgttttgaaccatcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 tggttctcgtatgatgaatatgtagatagtatacccttaacacatgttttgaaccatcaa 4973
Query: 108 gaaagattgagaccaggaagtggcagctcctctattaggggtgcaagtccaataaagaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 gaaagattgagaccaggaagtggcagctcctctattaggggtgcaagtccaataaagaac 4913
Query: 168 aatttattcgatcaaaaatttgttgatacagaagcttcagttcgtgatacacataaaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 aatttattcgatcaaaaatttgttgatacagaagcttcagttcgtgatacacataaaatt 4853
Query: 228 ctcatgatgaaactggtaacgaacaaaactgtattgttttgtacatctaagggtgaaata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 ctcatgatgaaactggtaacgaacaaaactgtattgttttgtacatctaagggtgaaata 4793
Query: 288 tcaatcataaatgagacaattaagcctatttcaaatccatctctaaacgatataaaagtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 tcaatcataaatgagacaattaagcctatttcaaatccatctctaaacgatataaaagtg 4733
Query: 348 ttcaaaaaaattaacaatgatttggctgttctttgtagcaagaaaggagacatcaagcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 ttcaaaaaaattaacaatgatttggctgttctttgtagcaagaaaggagacatcaagcta 4673
Query: 408 tttgatggcaccaaactttccaagtacgaacttgatatatcagacctttcttctgacgag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tttgatggcaccaaactttccaagtacgaacttgatatatcagacctttcttctgacgag 4613
Query: 468 gaaataacttctctggatttcagtgtgaatgaaaactattttgttgttggtgattccaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 gaaataacttctctggatttcagtgtgaatgaaaactattttgttgttggtgattccaca 4553
Query: 528 gggaagttatctgtatacaaagataacgtatgcgaatatcagagcaaagttcacagcgct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 gggaagttatctgtatacaaagataacgtatgcgaatatcagagcaaagttcacagcgct 4493
Query: 588 gccattaacggtatccaaatatatgagaaagatgctttcaaaattgtaatcactatcagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 gccattaacggtatccaaatatatgagaaagatgctttcaaaattgtaatcactatcagc 4433
Query: 648 a-gagacagaacaatgaacttcatagaactacgagctggggaatggaatatttgcgaaac 706
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4432 acgagacagaacaatgaacttcatagaactacgagctggggaatggaatatttgcgaaac 4373
Query: 707 agttaaagacaataaggggaatattatacagcttgagatgtgcgacaataaagtatatac 766
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4372 agttaaagacaataaggggaatattatacagcttgagatgtgcgacaataagttatatac 4313
Query: 767 aatttcgagtgataggactgtatcttgctatcggatagatattgtcgacatta-cttaaa 825
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 4312 aatttcgagtgataggactgtatcttgctatcggatagatattgtcgacaataccttaaa 4253
Query: 826 cgtttc-aaagaaa-catcctttccgt-aagaa-tctccattgagattac-attgac-aa 879
|||||| ||||||| |||||||||||| ||||| |||||||||||||||| |||||| ||
Sbjct: 4252 cgtttcaaaagaaaccatcctttccgtaaagaattctccattgagattacaattgacaaa 4193
Query: 880 ct-cagat-tcattg-gtcacgcttcgac-aaaccatgccaatttttgataaa 928
|| ||||| |||||| |||||||| |||| ||||||||| ||| |||||||||
Sbjct: 4192 ctacagatatcattgtgtcacgctccgacaaaaccatgcaaatatttgataaa 4140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7881
Number of Sequences: 1807
Number of extensions: 7881
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)