BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC19ZH02FM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1724                                                        1639   0.0  

>3x_Contig1724 
          Length = 20938

 Score = 1639 bits (827), Expect = 0.0
 Identities = 865/874 (98%), Gaps = 3/874 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11077 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 11018

                                                                         
Query: 146   gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11017 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 10958

                                                                         
Query: 206   ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10957 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 10898

                                                                         
Query: 266   tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10897 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 10838

                                                                         
Query: 326   tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10837 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 10778

                                                                         
Query: 386   tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggacaccg 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777 tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggacaccg 10718

                                                                         
Query: 446   gacacaagagacaagagacaagagacaagagaaactaagggagggggaagaaaaacggta 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10717 gacacaagagacaagagacaagagacaagagaaactaagggagggggaagaaaaacggta 10658

                                                                         
Query: 506   ttattttaccccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatc 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10657 ttattttaccccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatc 10598

                                                                         
Query: 566   actttgtaacattatgtattctctcttcctaaagtattttcaattacttacccttaattt 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10597 actttgtaacattatgtattctctcttcctaaagtattttcaattacttacccttaattt 10538

                                                                         
Query: 626   ttgagaggcctctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatca 685
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10537 ttgagaggcctctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatca 10478

                                                                         
Query: 686   ataaaacttgcgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccag 745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10477 ataaaacttgcgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccag 10418

                                                                         
Query: 746   tccaaccgaattgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgta 805
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10417 tccaaccgaattgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgta 10358

                                                                         
Query: 806   tgtgtggttagcatgaattctaacctccattcttgattgttaattggagtatcactcagc 865
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10357 tgtgtggttagcatgaattctaacctccattcttgattgttaattggagtatcactcagc 10298

                                                                         
Query: 866   caatcaattttcaggaactgccaaaaccttgaaa-tttcagctttcaagaattagat-tt 923
             |||||||||||||| ||||||||||||||||||| |||||||||  ||||||||||| ||
Sbjct: 10297 caatcaattttcagaaactgccaaaaccttgaaattttcagcttcaaagaattagatatt 10238

                                               
Query: 924   attataacaaagga-gnagcagcaattacacatt 956
             ||||||||||| ||   |||||||||||||||||
Sbjct: 10237 attataacaaaagatagagcagcaattacacatt 10204


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7163
Number of Sequences: 1807
Number of extensions: 7163
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)