BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH02RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1616 0.0
>3x_Contig1735
Length = 19486
Score = 1616 bits (815), Expect = 0.0
Identities = 881/899 (97%), Gaps = 4/899 (0%)
Strand = Plus / Plus
Query: 49 gctttaccaagtgaaattgacgattttttcagaaaacaactatacatcatatactatttg 108
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12780 gctttaccaagtgaaattgacgaaacgttcagaaaacaactatacatcatatactatttg 12839
Query: 109 gaaaattgtagatgtcttcttgcagtccagactgaacatttatgtctaccatccttaact 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12840 gaaaattgtagatgtcttcttgcagtccagactgaacatttatgtctaccatccttaact 12899
Query: 169 aaggtgaaaaaattgaccgacttcgaattcgtcttaactggtgcaaaagccaaactcacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12900 aaggtgaaaaaattgaccgacttcgaattcgtcttaactggtgcaaaagccaaacgcacc 12959
Query: 229 aagtttcaacagattgctcattcaggacttattattctagcaaagtctcactcaaacaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12960 aagtttcaacagattgctcattcaggacttattattctagcaaagtctcactcaaacaac 13019
Query: 289 gaaaggtttacagaggctgagtctccagatacttttgaattggactcggatctactatta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13020 gaaaggtttacagaggctgagtctccagatacttttgaattggactcggatctactatta 13079
Query: 349 gagaaaccacattttgaagccattggtgatgaacatatagatgaacagatagtgaaaaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13080 gagaaaccacattttgaagccattggtgatgaacatatagatgaacagatagtgaaaaag 13139
Query: 409 caaaagttgaacgacacaaatggattccttgaagacaaaattctccctgttgcaatcaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 caaaagttgaacgacacaaatggattccttgaagacaaaattctccctgttgcaatcaga 13199
Query: 469 caggagttcattccgcaatctttgcaagagcttgatccgaataatcaacctgctttgagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13200 caggagttcattccgcaatctttgcaagagcttgatccgaataatcaacctgctttgagt 13259
Query: 529 caatatgataatattcaattacttctcagactatacacaataagacagacatcgcccgcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13260 caatatgataatattcaattacttctcagactatacacaataagacagacatcgcccgcc 13319
Query: 589 aacaaccctttaacggaagaagagctcagtgcattaatagcgagagtcctatatcaagac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13320 aacaaccctttaacggaagaagagctcagtgcattaatagcgagagtcctatatcaagac 13379
Query: 649 ggtgccaaaaactggacagttttttcacgtgccttatgggaaagatcgatcgtagaaact 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13380 ggtgccaaaaactggacagttttttcacgtgccttatgggaaagatcgatcgtagaaact 13439
Query: 709 aaaagagctaaaactgtggaaagaggtttgttgcaaatgcaatcatttgttgangaattg 768
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 13440 aaaagagctaaaactgtggaaagaggtttgttgcaaatgcaatcattggttgaggaattg 13499
Query: 769 ggtttacgaattaccactaaaatgataccagatagagccagtgacgtggaatctacccaa 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13500 ggtttacgaattaccactaaaatgataccagatagagccagtgacgtggaatcta-ccaa 13558
Query: 829 gc-acgattg-aatacatacaccagttaccactaatcccacgttggtctcttgatgcttc 886
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13559 gcaacgattgaaatacatacaccagttaccactaatcccacgttggtctcttgatgctac 13618
Query: 887 gttagccg-aaaatacatgtcntttagtattctaagatcagcngntgaaatatacgaga 944
|||||||| |||||||||||| | |||||||||||||||| | ||||||||||||||
Sbjct: 13619 gttagccgaaaaatacatgtctctaggtattctaagatcagcggttgaaatatacgaga 13677
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6590
Number of Sequences: 1807
Number of extensions: 6590
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)