BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH03RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1635 0.0
>3x_Contig1739
Length = 22061
Score = 1635 bits (825), Expect = 0.0
Identities = 890/911 (97%), Gaps = 2/911 (0%)
Strand = Plus / Plus
Query: 47 gctttttattcggcctgatctttttcgacctttctttcaaataacgagatgatatcttac 106
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9352 gctttttattcggcctgatctttcgcgacctttctttcaaataacgagatgatatcttac 9411
Query: 107 tctccctacagtgcaaattgatgaaaaagctttacattggaaatattcaaatgttttttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9412 tctccctacagtgcaaattgatgaaaaagctttacattggaaatattcaaatgttttttt 9471
Query: 167 ctctggattttagttgtttttttttcgacctttgacgattttctgtattttttcgtat-g 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 9472 ctctggattttagttgtttttttttcgacctttgacgattttctgtattttttcgaaaag 9531
Query: 226 ttaatagtcaattttgtcttttactagtatgaaatgccaattgtgtcacgtacagagctg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9532 ttaatagtcaattttgtcttttactagtatgaaatgccaattgtgtcacgtacagagctg 9591
Query: 286 acaattaaacttaaatcataattacaggttttagaatacatatgaaactccccgaatgtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9592 acaattaaacttaaatcataattacaggttttagaatacatatgaaactccccgaatgtt 9651
Query: 346 ttttttattatattgacaaatgacacgacgaaggtccaattttttgctatgtaaaaatta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9652 ttttttattatattgacaaatgacacgacgaaggtccaattttttgctatgtaaaaatta 9711
Query: 406 tatacatttttgatcgatgaagaaaaaaagtctctagaagtggacgaatttctgggcaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712 tatacatttttgatcgatgaagaaaaaaagtctctagaagtggacgaatttctgggcaaa 9771
Query: 466 gttctcatggccatcttcagcgctcttaccgatcttaatatatttatcattttttatgtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9772 gttctcatggccatcttcagcgctcttaccgatcttaatatatttatcattttttatgtt 9831
Query: 526 ttccttaatatcgtggtgaagtgctattaagtaattatcaaagctttcgaccaactcgat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9832 ttccttaatatcgtggtgaagtgctattaagtaattatcaaagctttcgaccaactcgat 9891
Query: 586 ggatttatcctcaaccatcagttggttcatcacatgagaataataaggatccacgttagg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9892 ggatttatcctcaaccatcagttggttcatcacatgagaataataaggatccacgttagg 9951
Query: 646 tctcaatgggacaactggaagatagtctatatttatgatttgactccaatttttgatcac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9952 tctcaatgggacaactggaagatagtctatatttatgatttgactccaatttttgatcac 10011
Query: 706 attgcgggccttgatatttatatcggtgtctaaatctgggcacctgccaccgaatatatc 765
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10012 attgcgggccttgatatttatatcggtgtctaaatctggcaacctgccaccgaatatatc 10071
Query: 766 cagttggttgattggtccctcgtatgataacaaatcacgtattaacataagatttgngtt 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10072 cagttggttgattggtccctcgtatgataacaaatcacgtattaacataagatttgtgtt 10131
Query: 826 ttcattcatccatagnaaacagnattcaccttggnaaattangttacagnccacatttat 885
||||||||||||||| ||||| ||||||||||| |||||| || |||| | |||||||
Sbjct: 10132 ttcattcatccataggaaacaagattcaccttggaaaattaggtaacagccaccatttat 10191
Query: 886 caattgccgatgactagaacgtactgattaagtttttatatta-tgaattgcaagagttg 944
|||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||
Sbjct: 10192 caattgccgatgactagaacgtactgataaggtttctatattattgaattgcaagagttg 10251
Query: 945 cattttatcat 955
|||||||||||
Sbjct: 10252 cattttatcat 10262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9079
Number of Sequences: 1807
Number of extensions: 9079
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)