BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH04FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig781 434 e-121
>3x_Contig781
Length = 2349
Score = 434 bits (219), Expect = e-121
Identities = 275/286 (96%), Gaps = 6/286 (2%)
Strand = Plus / Plus
Query: 635 tattcgactcagtttcaaaagtacctg-acacagaanagccttgtttggttggacgatcc 693
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 4 tattcgactcagtttcaaaagtacctggacacagaaaagccttgtttggttggacgatcc 63
Query: 694 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 123
Query: 754 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 183
Query: 814 agttatattttttc-acgtgacagatattcacag-acatttaata-aaagtagggatttc 870
|||||||||||||| ||||||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 184 agttatattttttcaacgtgacagatattcacagaacatctaatagaaagtaaggatttc 243
Query: 871 aa-gcgatgagcattgcaagcaaa-ggaatgcttctggaagtaaga 914
|| |||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 244 aaggcgatgagcagtgcaagcaaagggaatgctactggaagtaaga 289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,358
Number of Sequences: 1807
Number of extensions: 14358
Number of successful extensions: 227
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)