BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH06FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig845 1459 0.0
>3x_Contig845
Length = 3389
Score = 1459 bits (736), Expect = 0.0
Identities = 770/779 (98%), Gaps = 2/779 (0%)
Strand = Plus / Minus
Query: 150 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 3330
Query: 210 cctgttggagttgtatggtcagatagtactgtgtaaggaactttagcagggataggtttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 cctgttggagttgtatggtcagatagtactgtgtaaggaactttagcagggataggtttg 3270
Query: 270 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 3210
Query: 330 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 3150
Query: 390 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 3090
Query: 450 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 3030
Query: 510 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgatggggttgttgctgc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgatggggttgttgctgc 2970
Query: 570 tgctgttgttgttgctgctgctgagattgctgctgagattgctgctggggttgctgctgg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 tgctgttgttgttgctgctgctgagattgctgctgagattgctgctggggttgctgctgg 2910
Query: 630 ggctgtaattgaatctgcgcctgcagtggctgtttgggaggagcaggtgccanaggatcc 689
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 2909 ggctgtaattgaatctgcgcctgcagtggctgttggggaggagcaggtgccaaaggatcc 2850
Query: 690 atgaggacactcatatgccttttctttgaagagccagtagaagatattcttctttcaaaa 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2849 atgaggacactcatatgccttttctttgaagagccagtagaagatattcttctttcaaaa 2790
Query: 750 gggttcatcatcagattcacatgttggtcagattgacttcctcttggattcatgtgataa 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2789 gggttcatcatcagattcacatgttggtcagattgacttcctcttggattcatgtgataa 2730
Query: 810 gactggggagaa-gttcggcgttaccattaaacgcattgtattggtgctgtaacaagttt 868
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2729 gactggggagaaggtccggcgttaccattaaacgcattgtattggtgctgtaacaagttt 2670
Query: 869 acagatgatgggagaattgatgaattcatgtttaggttgaagtgaccaaaaccattgag 927
||||||||||| ||| |||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 2669 acagatgatggaagagttgatgaattcatg-ttaggttgaagtgacgaaaacgattgag 2612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8001
Number of Sequences: 1807
Number of extensions: 8001
Number of successful extensions: 491
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)