BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH06RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1450 1487 0.0
>3x_Contig1450
Length = 9648
Score = 1487 bits (750), Expect = 0.0
Identities = 863/893 (96%), Gaps = 6/893 (0%)
Strand = Plus / Plus
Query: 49 ttgtacattataatatggttcatactccaccaaaaacaacatcttttgactacctaaata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 ttgtacattataatatggttcatactccaccaaaaacaacatcttttgactacctaaata 3319
Query: 109 ttttcctagcacacgtagggcatttcttagatcttttctttgattatcagagctccttaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 ttttcctagcacacgtagggcatttcttagatcttttctttgattatcagagctccttaa 3379
Query: 169 tagatgagaattgtaatattcaatcatcgtattggcatcaaggaggcttgcgtcaatgtc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 tagatgagaattgtaatattcaatcatcgtattggcatcaaggaggcttgcgtcaatgtc 3439
Query: 229 agttggatctaaaccaaatacctgtaatgcattattcaaatcttcatacccaacaacatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 agttggatctaaaccaaatacctgtaatgcattattcaaatcttcatacccaacaacatc 3499
Query: 289 ttgttttccacagtaagcaataagctggtaactaccctttgcgtttgttacatattggag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 ttgttttccacagtaagcaataagctggtaactaccctttgcgtttgttacatattggag 3559
Query: 349 agcatcaaaataatggctgatgttttcctgatcaagtgcaatttgagtttcatagttttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 agcatcaaaataatggctgatgttttcctgatcaagtgcaatttgagtttcatagttttt 3619
Query: 409 aatgatatccttatcgatgtacttaaaagcaacagataggttaataaaatggtaatttat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 aatgatatccttatcgatgtacttaaaagcaacagataggttaataaaatggtaatttat 3679
Query: 469 gtcgtaggggaatggttcaatgtgttggtggntcaaaatattgaaccaccatgtgtgact 528
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3680 gtcgtaggggaatggttcaatgtgttggtggttcaaaatattgaaccaccatgtgtgact 3739
Query: 529 ggcactaaaatgttgattagaaaagcactttgccactgtcttcttttcagtaccaagttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 ggcactaaaatgttgattagaaaagcactttgccactgtcttcttttcagtaccaagttc 3799
Query: 589 attttcaagtagcatcgactgcttaccaattaaaacaacctccatggattttctggtata 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 attttcaagtagcatcgactgcttaccaattaaaacaacctccatggattttctggtata 3859
Query: 649 cgcctctctaatccctctgacccttaaatctgtgatataatcaactaaattctggtggct 708
|||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 3860 cgcctctctaatccctctgaccttaaaatctgtgatataatcaactaaa-tctggtggct 3918
Query: 709 tattattctcttccgattggacattatcttcttacagcggtcttctgcaaactgaaatca 768
||| | |||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3919 tatattcctctccagattggacattatcttc-tacagcggtcttctgcaaactgaaatca 3977
Query: 769 aacattgccgttaaccagtcagtattaatttgggagttgagtgcaacacttatccctgga 828
||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 3978 aacattgtcgttaaccagtcagtattaatttgtgagttgagtgcaacac-tatccctgga 4036
Query: 829 aataat-tttaactcactattagcagatttcttctg-catgggttctttaacttcatgga 886
|||||| || ||||||||||||||||||||| |||| |||||||||| || ||||| |
Sbjct: 4037 aataatcttaaactcactattagcagatttcctctgtaatgggttcttaaatatcatgaa 4096
Query: 887 gagagttttcaaaccttcgggcttggctaggaatttcatccggggtccataaa 939
||||||||||||| || ||||||||||||||| || |||||| || |||||
Sbjct: 4097 aagagttttcaaacactc-ggcttggctaggaatatcgtccgggttcaataaa 4148
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7478
Number of Sequences: 1807
Number of extensions: 7478
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)