BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH08FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig427 1626 0.0
>3x_Contig427
Length = 1983
Score = 1626 bits (820), Expect = 0.0
Identities = 850/856 (99%), Gaps = 3/856 (0%)
Strand = Plus / Plus
Query: 87 tattcaaattatctgtccaagattatcaagcaaaaagttacctatacgaatcaactgcta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tattcaaattatctgtccaagattatcaagcaaaaagttacctatacgaatcaactgcta 658
Query: 147 tttaccacatgttgtttcattaacgtgatcgctttcaatgcgaacgatgaagataagtta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttaccacatgttgtttcattaacgtgatcgctttcaatgcgaacgatgaagataagtta 718
Query: 207 aataaattggtcccattgattttggaaatttccgcaaaacttttggcatcggattcaagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aataaattggtcccattgattttggaaatttccgcaaaacttttggcatcggattcaagc 778
Query: 267 gattgtcaaatggctgctcatactatgctcgcggtacttgccaccgcattgcctttgaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gattgtcaaatggctgctcatactatgctcgcggtacttgccaccgcattgcctttgaac 838
Query: 327 aaaagcattatcattgcggctacggaaactatcttggccaatttaaaggaagacgatgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaaagcattatcattgcggctacggaaactatcttggccaatttaaaggaagacgatgct 898
Query: 387 agaaaaaaagctctcgtcacaatctcaaaacttttccaaaccttgaaaggtgtaggtaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 agaaaaaaagctctcgtcacaatctcaaaacttttccaaaccttgaaaggtgtaggtaat 958
Query: 447 gtggatcaattaccggtcaagatctataaactcgttgataattctttcccattcgaatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 gtggatcaattaccggtcaagatctataaactcgttgataattctttcccattcgaatat 1018
Query: 507 ctactacagttcctgagtaatgaaaacaaatattcctcagataaatttttcactgcatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctactacagttcctgagtaatgaaaacaaatattcctcagataaatttttcactgcatac 1078
Query: 567 attaggtctgtcatcagatatgatcatgataaattgagtcaaattgtcaaaatcttaagg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 attaggtctgtcatcagatatgatcatgataaattgagtcaaattgtcaaaatcttaagg 1138
Query: 627 aagattaagttggaaaaatacgaagttagatttatcatcactgatttgatacatttatct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 aagattaagttggaaaaatacgaagttagatttatcatcactgatttgatacatttatct 1198
Query: 687 gaagttctagaggacaagtcacaattaatcgatgtttttgaatacttcatttccattaac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 gaagttctagaggacaagtcacaattaatcgatgtttttgaatacttcatttccattaac 1258
Query: 747 gagggactagttttgaaatgtcttcaagcactaaacctgaccggagaagttttcgaaata 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 gagggactagttttgaaatgtcttcaagcactaaacctgaccggagaagttttcgaaata 1318
Query: 807 aga-tgacaacttcattattttccgtcaagaacagtgcggaacaatctggtgaagatatc 865
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 agattgacaacttcattattttccgtcaagaacagtgcggaacaatctggtgaagatatc 1378
Query: 866 a-taaagttctagatgatgcttaagcattcaccgcgaatggttcagctgttccatttaaa 924
| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1379 attaaagttctagatgatgctaaagcatcaaccgcgaatggttcagctgttccatttaaa 1438
Query: 925 ga-ttcatgaccaaaa 939
|| |||||||||||||
Sbjct: 1439 gatttcatgaccaaaa 1454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7667
Number of Sequences: 1807
Number of extensions: 7667
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)