BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH08RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1701 0.0
>3x_Contig1739
Length = 22061
Score = 1701 bits (858), Expect = 0.0
Identities = 894/901 (99%), Gaps = 4/901 (0%)
Strand = Plus / Plus
Query: 44 gcttgtagttataacaattcaatgtatttgattgtcccgaatctatattcaagatattct 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3234 gcttgtagttataacaattcaatg-atttgattgtcccgaatctatattcaagatattct 3292
Query: 104 cttctagctggatccaaaaacactttgtcgaattcaaaccacaatctccagaatgtacgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 cttctagctggatccaaaaacactttgtcgaattcaaaccacaatctccagaatgtacgg 3352
Query: 164 aatagccaaggtatatgtctgttaactagaccacccaaagtgttggttcttccgactagc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 aatagccaaggtatatgtctgttaactagaccacccaaagtgttggttcttccgactagc 3412
Query: 224 atagattcattagtgacaccaaaatcaacacacgaaatgataccattcttagcatccaat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 atagattcattagtgacaccaaaatcaacacacgaaatgataccattcttagcatccaat 3472
Query: 284 aaagatactgcgtgatcaatggccgcatagaaacttggtatcatgctcaatgaataagaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 aaagatactgcgtgatcaatggccgcatagaaacttggtatcatgctcaatgaataagaa 3532
Query: 344 aatgtgatcaactgagctgattcctctggtatttcaaaatcgcaagcatctccacagatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 aatgtgatcaactgagctgattcctctggtatttcaaaatcgcaagcatctccacagatc 3592
Query: 404 acttccacatttttccatccatgctctttacaacgttttcttgcaacctcacatagcgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 acttccacatttttccatccatgctctttacaacgttttcttgcaacctcacatagcgat 3652
Query: 464 ggagagagatcaatcaagtaaattttgtcaaacgttgtatccaagtttgttaaaagcgcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 ggagagagatcaatcaagtaaattttgtcaaacgttgtatccaagtttgttaaaagcgcc 3712
Query: 524 atttgggagatattgaaaccagtcccacccccgacatcaatccagacattacctttcttt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 atttgggagatattgaaaccagtcccacccccgacatcaatccagacattacctttcttt 3772
Query: 584 tcagagaggtgagaaagagataatttaaggcttgtttcacgaccttggagtaaaacaccc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 tcagagaggtgagaaagagataatttaaggcttgtttcacgaccttggagtaaaacaccc 3832
Query: 644 cttgtacgatcgtagagtttggcttgggatttatagaattgttctaagttttcttgctga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3833 cttgtacgatcgtagagtttggcttgggatttatagaattgttctaagttttcttgctga 3892
Query: 704 ttattgttgcttgtcactgacgtaaacggtttganaaagcactgccagcagaattgtaca 763
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3893 ttattgttgcttgtcactgacgtaaacggtttgaaaaagcactgccagcagaattgtaca 3952
Query: 764 acggaacggagagattcgctgaacataagaagaacaactagtggtgtgataataccgaca 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3953 acggaacggagagattcgctgaacataagaagaacaactagtggtgtgataataccgaca 4012
Query: 824 ctagccccaacaacctttggnagattctctcatcttttcgttccactcttgcccgacatg 883
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4013 ctagccccaacaacctttgg-agattctctcatcttttcgttccactcttgcccgacatg 4071
Query: 884 tttcatattacc-aacatgacaccaaggacgttttcgtttag-aaactcaacgctttctc 941
|||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 4072 tttcatataaccaaacatgacaccaaggacgttttcgtttagaaaactcaacgcttcctc 4131
Query: 942 t 942
|
Sbjct: 4132 t 4132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6716
Number of Sequences: 1807
Number of extensions: 6716
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)