BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH10RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 1622 0.0
>3x_Contig515
Length = 1717
Score = 1622 bits (818), Expect = 0.0
Identities = 890/905 (98%), Gaps = 7/905 (0%)
Strand = Plus / Minus
Query: 45 gcttgccggtgtttaccctttgatagaactctcgttgactctttccaattttgatataat 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1432 gcttgccggtgtttaccctttgagagaactctcgttgactctttccaattttgatataat 1373
Query: 105 agacaaggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 agacaaggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttc 1313
Query: 165 aactgataacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 aactgataacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtgg 1253
Query: 225 cccttatgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 cccttatgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcc 1193
Query: 285 tcctacaatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 tcctacaatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaa 1133
Query: 345 actgttccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 actgttccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacgg 1073
Query: 405 agtatcagagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 agtatcagagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaa 1013
Query: 465 agctaagaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 agctaagaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaa 953
Query: 525 gttcttcaagaagtgataaatctccacccacatatacttgtatatttatagttaatcgta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gttcttcaagaagtgataaatctccacccacatatacttgtatatttatagttaatcgta 893
Query: 585 tcatcgtcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tcatcgtcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgc 833
Query: 645 atatccgggtaatatcttgcttttcgtctttctttc-tttctgaatt-cacattcgattt 702
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 832 atatccgggtaatatcttgcttttcgtctttctttcttttctgaattccacattcgattt 773
Query: 703 cgaacttaaaatagacaattaagagatccaatgtttgttaaataagtgtgtaagttgtta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 772 cgaacttaaaatagacaattaagagatccaatgtttgttaaataagtgtgtaagttg-ta 714
Query: 763 tttttagccagatctttttaacctc-aaaggtcaacaggaagagggaagcaagcgattcc 821
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 713 attttagccagatctttttaacctcaaaaggtcaacaggaagagggaagcaagcgatacc 654
Query: 822 cagcgttaaaagcagctaacgcacacatattctctggacagctttcagnctgttatacag 881
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 653 cagcgttaaaagcagctaacgcacacatattctctgaacagcttccaggctgttatacag 594
Query: 882 ctacttttggactac-actcattttcttttaccag-accacctcattaaatctggaaaag 939
|||| |||||||||| |||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 593 ctac-tttggactacaactcattttcttttacaagaaccacctcattaaatctggagaag 535
Query: 940 ctttc 944
|||||
Sbjct: 534 ctttc 530
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8053
Number of Sequences: 1807
Number of extensions: 8053
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)