BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH11FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 1241 0.0
>3x_Contig959
Length = 3065
Score = 1241 bits (626), Expect = 0.0
Identities = 727/760 (95%), Gaps = 1/760 (0%)
Strand = Plus / Plus
Query: 87 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 2186
Query: 147 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 2246
Query: 207 attctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgttctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 attctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgttctt 2306
Query: 267 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 2366
Query: 327 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 2426
Query: 387 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 2486
Query: 447 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 2546
Query: 507 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatcag 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatcat 2606
Query: 567 ttttgcaactgttgcaatgacctttttttcgactttgattgtacaaatcttctcttcggt 626
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2607 ttttgcaactgttgcaatgacctttttctcgactttgattgtacaaatcttctcttcggt 2666
Query: 627 tatcaaataccacagtaccagcacacttgagaca-ggggaaagctatcgtgggggttcca 685
|||||| |||||||||| ||||||||||||||| |||| || ||||||||||||||||
Sbjct: 2667 tatcaattaccacagtattagcacacttgagacatggggttagttatcgtgggggttcca 2726
Query: 686 tcatcaaggaatgacttgatcgaaccctgcttcaacgctgnttctctttctgccttggtg 745
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2727 tcatcaaggaatgacttgatcgaaccctgcttcaacgctgtttctctttctgccttggtg 2786
Query: 746 accacagaaagacactctntattcgagcacatggttctggagactctgaaagtacaataa 805
|| || |||||||||| |||| |||||| | || | || ||||||| ||||||| |
Sbjct: 2787 actactttaagacactctgtatttgagcactttgtacgtgattctctgaatgtacaatta 2846
Query: 806 catttctgacacattttgataacctgagaagatagtgtca 845
| | ||||||||| ||||||||| ||||||| |||||
Sbjct: 2847 cttccctgacacatcctgataacctttgaagatattgtca 2886
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5795
Number of Sequences: 1807
Number of extensions: 5795
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)