BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC19ZH11RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1628 0.0
>3x_Contig1608
Length = 13037
Score = 1628 bits (821), Expect = 0.0
Identities = 887/900 (98%), Gaps = 7/900 (0%)
Strand = Plus / Minus
Query: 47 gcaatttctctttttccaaacgaatcataataacagattaatataatcactaatccattc 106
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796 gcaatttctctagctccaaacgaatcataataacagattaatataatcactaatccattc 3737
Query: 107 gcactatttctttatagacataggttcaaatatttaatctgtaaaaagataaatcacgta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3736 gcactatttctttatagacataggttcaaatatttaatctgtaaaaagataaatcacgta 3677
Query: 167 attgcaagaaaaaacacgaactttagatctagtgaagagttttttattaccgccagataa 226
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3676 attgcaagaaaaaacacgaactttagatctagtgaagagttttttatcaccgccagataa 3617
Query: 227 agggattctgactggaagttgtgacaacaggccattgcaatgtcatttcgtgcttccata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3616 agggattctgactggaagttgtgacaacaggccattgcaatgtcatttcgtgcttccata 3557
Query: 287 aacagcacgaatgaacagaccatatggggtaaatgcttggcaactctttctcaaataaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3556 aacagcacgaatgaacagaccatatggggtaaatgcttggcaactctttctcaaataaac 3497
Query: 347 cctgatgtcttcataacaatcaccgaaaatggtgtattgatatcatccatgaatgcaaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3496 cctgatgtcttcataacaatcaccgaaaatggtgtattgatatcatccatgaatgcaaca 3437
Query: 407 gacacgaccatggccaaggtacgatttcctaagtcgttctttacagagtatcacttcgag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3436 gacacgaccatggccaaggtacgatttcctaagtcgttctttacagagtatcacttcgag 3377
Query: 467 ccgaagaagattgtatttggtgaatctggagtgcagcagatcaccgattgtaatgacatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3376 ccgaagaagattgtatttggtgaatctggagtgcagcagatcaccgattgtaatgacatt 3317
Query: 527 cttcacacaatttatagtttcaaagcgaatgcaaagtatctttccctattatcacttaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 cttcacacaatttatagtttcaaagcgaatgcaaagtatctttccctattatcacttaaa 3257
Query: 587 caagaggatacaattaaagaatacatgttaactatcgacaattgtgataattgttctgaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 caagaggatacaattaaagaatacatgttaactatcgacaattgtgataattgttctgaa 3197
Query: 647 actatagctaacaaactcataatcaaaatgaagacagcatctttgctaactaaagaatat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3196 actatagctaacaaactcataatcaaaatgaagacagcatctttgctaactaaagaatat 3137
Query: 707 caagttaattttgatccattggaaagtgttcagatcatattaagtctgaaatataaacaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3136 caagttaattttgatccattggaaagtgttcagatcatattaagtctgaaatataaacaa 3077
Query: 767 aaattcctttcagtatacaacaacanaagtaagggcagatcattagatcctcggttagtg 826
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3076 aaattcctttcagtatacaacaacaaaagtaagggcagatcattagatcctcggttagtg 3017
Query: 827 gattatttcaaatc-ttac-aacagaattag-acatgatatgtttaaataga-gtatcgc 882
|||||||||||||| |||| ||||||||||| ||||||||||||| |||||| |||||||
Sbjct: 3016 gattatttcaaatctttacaaacagaattagaacatgatatgttt-aatagaggtatcgc 2958
Query: 883 caatgaa-acacatattgtgagcacagtgaaaaatacaccgttgacgggtaacgacgaaa 941
||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2957 caatgaacaca-atattgtgagcacagtgaaaaatacaccgttgacggttaacgacgaaa 2899
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7725
Number of Sequences: 1807
Number of extensions: 7725
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)