BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZA01RM1.SCF screened BAC_end
         (992 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1345                                                        1009   0.0  

>3x_Contig1345 
          Length = 7291

 Score = 1009 bits (509), Expect = 0.0
 Identities = 615/641 (95%), Gaps = 7/641 (1%)
 Strand = Plus / Minus

                                                                        
Query: 230  acggtggttggctgtaccctgtaacaacaggcatcaccacgccagttgcaataggaacaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 acggtggttggctgtaccctgtaacaacaggcatcaccacgccagttgcaataggaacaa 7229

                                                                        
Query: 290  ctggtgctgctggctgagataacgaccgaacttcagcaggacgtgcaacaggaggagctt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 ctggtgctgctggctgagataacgaccgaacttcagcaggacgtgcaacaggaggagctt 7169

                                                                        
Query: 350  catgaacaggagacggatcacgtaaattctcacgagtcggtgtcctgcttggtaaacttg 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 catgaacaggagacggatcacgtaaattctcacgagtcggtgtcctgcttggtaaacttg 7109

                                                                        
Query: 410  agacggaagatttggatcttttttcaaaaacaacatcattgacttcagcatcatcttcat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 agacggaagatttggatcttttttcaaaaacaacatcattgacttcagcatcatcttcat 7049

                                                                        
Query: 470  cgtcaataatacgagacattgggtccgaaggcaaagtagggattgtaatcaagtttttta 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 cgtcaataatacgagacattgggtccgaaggcaaagtagggattgtaatcaagtttttta 6989

                                                                        
Query: 530  gaggttgaacagtattacaatcaaaataaaactcatttaaacgtgcacattgctctgtat 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6988 gaggttgaacagtattacaatcaaaataaaactcatttaaacgtgcacattgctcggtat 6929

                                                                        
Query: 590  acctatcaaacaacccacttaaagcatcataatcacccattttgttatacaaagctttca 649
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 6928 acctatcaaacaacccacttaaagcatcataatcacccatttgtttatacaaagctttca 6869

                                                                        
Query: 650  tcatagacgtaacaaacttgaatatttcatatgttttactaaccaaaggaattaagaacg 709
            |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 6868 tcatagacgtaacaaacttgaatattccatatgtttcactaaccaaaggaattaag-acg 6810

                                                                        
Query: 710  ggccttctac-atctaaaccagatgaaaaactaccaaacccactctttctggtagatatg 768
            |  | ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6809 gcgcctctacaatctaaaccagatgaaaaactaccaaacccactctttctgttagatatg 6750

                                                                        
Query: 769  cccgcaaaga-caatttcttgcag-tatcagcaacttcttcagaattcatt-aatcaaga 825
            |||||||||| ||||||||   || |||||||||| ||||||  ||||||| ||||||||
Sbjct: 6749 cccgcaaagatcaatttctgcaagttatcagcaacatcttcaagattcattaaatcaaga 6690

                                                     
Query: 826  a-agtcttgtacccttcg-taggatcagaacctgaaaccaa 864
            | ||||| ||| |||||| ||||||||||  ||||||||||
Sbjct: 6689 acagtctcgtaaccttcgttaggatcagacactgaaaccaa 6649


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7945
Number of Sequences: 1807
Number of extensions: 7945
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)