BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA02RM1.SCF screened BAC_end
(1054 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1796 1358 0.0
>3x_Contig1796
Length = 24558
Score = 1358 bits (685), Expect = 0.0
Identities = 758/779 (97%), Gaps = 3/779 (0%)
Strand = Plus / Plus
Query: 38 aaagccttccccacaagagttaaaaatatacttaatgtatggaaaactacccagtaagaa 97
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20113 aaagctttccccacaagagttaaaaatatacaaaatgtatggaaaactacccagtaagaa 20172
Query: 98 agacttattccaacacaaattgcaagaacgaaaatatttcgatagcggggactacgcttt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20173 agacttattccaacacaaattgcaagaacgaaaatatttcgatagcggggactacgcttt 20232
Query: 158 acgtagggcaggtgtgaaatctgacgatttgcagtcgagtccagttgctaataacaattt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20233 acgtagggcaggtgtgaaatctgacgatttgcagtcgagtccagttgctaataacaattt 20292
Query: 218 acctttgt-aattcctagcggattaagagaaagtatcatcaaaagaagaatgtccagtag 276
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20293 acctttgacaaatcctagcggattaagagaaagtatcatcaaaagaagaatgtccagtag 20352
Query: 277 tgcaaacggtcccagcaatgtcgacgcccaaaggctaaatagacaaggcagtatatcaag 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20353 tgcaaacggtcccagcaatgtcgacgcccaaaggctaaatagacaaggcagtatatcaag 20412
Query: 337 tggtccaccaccaccaaggtcacccaataaatagtagttgttctattattaaactcgaga 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20413 tggtccaccaccaccaaggtcacccaataaatagtagttgttctattattaaactcgaga 20472
Query: 397 atcacatcaataggaaagtctcggaacagatgtcaacattcccgtaagtctcatgcacat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20473 atcacatcaataggaaagtctcggaacagatgtcaacattcccgtaagtctcatgcacat 20532
Query: 457 cgtatggtttctctatgtcgccccgttttatttgatcttaccatacttgaattacaaatg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20533 cgtatggtttctctatgtcgccccgttttatttgatcttaccatacttgaattacaaatg 20592
Query: 517 gtttatataaattagatatcaactgttgtaacgcttttatataatggaaactttaacgct 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20593 gtttatataaattagatatcaactgttgtaacgcttttatataatggaaactttaacgct 20652
Query: 577 ttgcaaataacggacaattacttgtataggattagtattataaactttangaaagaagat 636
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20653 ttgcaaataacggacaattacttgtataggattagtattataaactttaggaaagaagat 20712
Query: 637 gttcgtataaatattgtgacatgaagtaattgccgctggacttatacatatatatttatt 696
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 20713 gttcgtataaatattgtgacatgaggtaattgccgctgaacttatacatatatatttatt 20772
Query: 697 gacggtat-aaaattttcctagtcttgtgaagaatagtngaccatggaagttgaattc-a 754
|||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||| || |
Sbjct: 20773 gacggtataaaaattttcctagtcttgtgaagaatagtagaccaaggaagtagaaatcaa 20832
Query: 755 tggaattttacaactgtgcgctatcggtaatgtcttgatagcaggttcggcaagtgact 813
|| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20833 tgaaatataacaactgtgcgctatcggtaatgtcttgatagcaggtcacgcaagtgact 20891
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8173
Number of Sequences: 1807
Number of extensions: 8173
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 1054
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1038
effective length of database: 10,329,639
effective search space: 10722165282
effective search space used: 10722165282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)