BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZA03FM1.SCF screened BAC_end
         (1013 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1398                                                        1209   0.0  

>3x_Contig1398 
          Length = 9161

 Score = 1209 bits (610), Expect = 0.0
 Identities = 695/716 (97%), Gaps = 7/716 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   catatttaggagtaatattggaatggatccatgtacttactcctgttggcaatgcaaaga 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 catatttaggagtaatattggaatggatccatgtacttactcctgttggcaatgcaaaga 3380

                                                                        
Query: 146  aagttggtattgtgaaatgtaaaggactggtttttttgtctgggctaacggacacagttg 205
            |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||
Sbjct: 3381 aagttggtattgtgaaatgtaaaggactggtaatcttgtctgggctaacggacacagttg 3440

                                                                        
Query: 206  agctaaagcctaaaacgtaggttgcngttgcaactatttgttctgattctttcaacataa 265
            ||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||||
Sbjct: 3441 agctaaagcctaaaacggaggtagctggtgcaactatttgttctgattctttcaacataa 3500

                                                                        
Query: 266  tatgccaactggatccttgtccattgagtgcaaaaatgcctctccctacgattttatttc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3501 tatgccaactggatccttgtccattgagtgcaaaaatgcctctccctacgattttatttc 3560

                                                                        
Query: 326  catttattgacacatctccggaatagcaaagtatattattcagaggatcattgaccgtcc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3561 catttattgacacatctccggaatagcaaagtatattattcagaggatcattgaccgtcc 3620

                                                                        
Query: 386  atccttgctcataatcatcaaggttaataactgtgacgttgtttagccttgtagatgcgg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3621 atccttgctcataatcatcaaggttaataactgtgacgttgtttagccttgtagatgcgg 3680

                                                                        
Query: 446  tacagatcagattaacaggctcatcggccgtggataatgtgacgaatccggtatcttttt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3681 tacagatcagattaacaggctcatcggccgtggataatgtgacgaatccggtatcttttt 3740

                                                                        
Query: 506  gtttttggatagcgaacagcttcgtaagctctatgtccttcaactcatttgaactatcaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3741 gtttttggatagcgaacagcttcgtaagctctatgtccttcaactcatttgaactatcaa 3800

                                                                        
Query: 566  taacggtgatattgttgagcttacctaccacagagctggaacttggtatccgaagcagaa 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3801 taacggtgatattgttgagcttacctaccacagagctggaacttggtatccgaagcagaa 3860

                                                                        
Query: 626  gtgagtcatgcaatggctgtagatctgggagttccacaaatggtcccgttccagtacctt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3861 gtgagtcatgcaatggctgtagatctgggagttccacaaatggtcccgttccagtacctt 3920

                                                                        
Query: 686  gttttctggcggacaaaattcgt-atgggtgttcgtaacaccgcattcccggagaa-ctt 743
            |||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||| |||
Sbjct: 3921 gttttctggcggac-aaattcgtaatggctgtccgtaacaccgcattcccggagaacctt 3979

                                                                    
Query: 744  tttactgga--ttaaagagacatcctttc-caacaatca-tatagatgatagaaat 795
             | ||||||  | |||||||||||||| |  |||||||| ||||||||||||||||
Sbjct: 3980 ctcactggaattaaaagagacatccttccaaaacaatcagtatagatgatagaaat 4035


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7096
Number of Sequences: 1807
Number of extensions: 7096
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)