BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA03RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1029 0.0
>3x_Contig1787
Length = 34189
Score = 1029 bits (519), Expect = 0.0
Identities = 638/666 (95%), Gaps = 9/666 (1%)
Strand = Plus / Plus
Query: 50 ctgaaggactcattttagagattttaagagctttttggcaccacataataccttgggact 109
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3849 ctgaaggactcattttagagatttcaagagctttttggcaccacataataccttgggact 3908
Query: 110 tattatcagtgattatataagagattcctcgattccaaatgactgtagtcaaccattcaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3909 tattatcagtgattatataagagattcctcgattccaaatgactgtagtcaaccattcaa 3968
Query: 170 tttcggtagtacaataattattagcgtgttttattctgatctgaaattgtgacaaaattg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3969 tttcggtagtacaataattattagcgtgttttattctgatctgaaattgtgacaaaattg 4028
Query: 230 tttaacagttctgttcatccgtgccctgggagacctctagtaaggaccttatccattgac 289
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 ttaaacagttctgttcatccgtgccctgggagacctctagtaaggaccttatccattgac 4088
Query: 290 tcaagatatcatccgaaatagatgtatttcccatatttctgtactattaggcatttcaaa 349
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 4089 tcaagatatcatccgaaatagatgtatttcccatatttctgt-caattaggcatttcaaa 4147
Query: 350 agttctgttgcaaaggcgtcagacatgatcttttgtgtatttgtgaatacatcccaaacg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4148 agttctgttgcaaaggcgtcagacatgatcttttgtgtatttgtgaatacatcccaaacg 4207
Query: 410 agttcgtcgactttatagtcggggtttgtagcagtagcgtctaaaantgtg-ttcaatag 468
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 4208 agttcgtcgactttatagtcggggtttgtagcagtagcgtctaaaa-tgtgtttcaatag 4266
Query: 469 cagtaaatctccgagattcatcgcatgcttcgaatgatcgcacgataatatcgataaatg 528
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4267 cagtaaatctccgagattcatcgc-tgcttcgaatgatcgcacgataatatcgataaatg 4325
Query: 529 tattgngtacttcttcagatgtcaacaccgattgttccttatctttggaagtgttaaaga 588
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 tattgtgtacttcttcagatgtcaacaccgattgttccttatctttggaagtgttaaaga 4385
Query: 589 aattcttgtttttgtgctataagtgcgaaggttcttttccttca-aaaaatccatttcga 647
||| |||| |||||||||||||||||| ||| | ||||||||| | ||||||| |||||
Sbjct: 4386 aatccttg-ttttgtgctataagtgcg-aggctactttccttcagagaaatccagttcga 4443
Query: 648 tgttcggtgcaaaaatttccaagaaaagaacgtcgattctaatcctccaaattacggtag 707
||| |||||| |||| |||||| |||| ||||| ||||||| |||| ||| |||||||
Sbjct: 4444 tgtccggtgc-aaaagttccaaagaaaggacgtcagttctaat-ctcccaataacggtag 4501
Query: 708 tacaac 713
||||||
Sbjct: 4502 tacaac 4507
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8266
Number of Sequences: 1807
Number of extensions: 8266
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)