BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA05FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1029 0.0
>3x_Contig1611
Length = 15286
Score = 1029 bits (519), Expect = 0.0
Identities = 584/599 (97%), Gaps = 5/599 (0%)
Strand = Plus / Plus
Query: 87 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 6173
Query: 147 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 6233
Query: 207 tccagcgctgccggaattgtttccagttaacacgctcgtcagtctactttccactatgcg 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tccagcgctgccggaagtgtttccagttaacacgctcgtcagtctactttccactatgcg 6293
Query: 267 acgaatatcaataaatgttgtctactccgcataatatacggagtgacttgtcttattata 326
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 acgaatatcaaaaaatgttgtctactccgcataatatacggagtgacttgtcttattata 6353
Query: 327 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 6413
Query: 387 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 6473
Query: 447 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 6533
Query: 507 aatttaacctt-accccctctctctggtaagcgctgaacgcatggccatcaggagattgt 565
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 aatttaaccttaaccccttctctctggtaagcgctgaacgcatggccatcaggagattgt 6593
Query: 566 ctgatatttttaggcagggccctttctttttc-agc-cagagaagggactgcccctcgga 623
|||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||
Sbjct: 6594 ctgatatttttaggcagggccctttctttttcaagcacagagatggaactgcccctcgga 6653
Query: 624 -ttattttttttttttttttgaaattttccctttggtaac-aaggggaacgtttccttg 680
||||||||||||||||||||| |||||| ||||| || | ||||| ||||||||||||
Sbjct: 6654 gttattttttttttttttttgatattttctctttgttatcaaagggtaacgtttccttg 6712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,003
Number of Sequences: 1807
Number of extensions: 18003
Number of successful extensions: 2616
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)