BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA05RM1.SCF screened BAC_end
(1002 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1265 0.0
>3x_Contig1801
Length = 57606
Score = 1265 bits (638), Expect = 0.0
Identities = 744/771 (96%), Gaps = 8/771 (1%)
Strand = Plus / Minus
Query: 53 aatatgttatacgtccgggtaaacattatctctcagtcacgtggaatactggagaagatg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17906 aatatgttatacgtccgggtaaacattatctctcagtcacgtggaatactggagaagatg 17847
Query: 113 taaaagttggaagcagcagccactatcggccactacttcaaacacagctggttgttggga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17846 taaaagttggaagcagcagccactatcggccactacttcaaacacagctggttgttggga 17787
Query: 173 gtcattttcaggatgacagctattccataccctttcttgggaagtaaacctaaaatatta 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17786 gtcattttcaggatgacagctattccataccctttcttgggaagtaaacctaaaatatta 17727
Query: 233 tggttttctctgttctcagtaaacctcgtcaatgacataatgaaatagtatggcagaaca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17726 tggttttctctgttctcagtaaacctcgtcaatgacataatgaaatagtatggcagaaca 17667
Query: 293 caccatacgcatcaatacagagactaacggaaattgattcgcccatattctactaaagaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17666 caccatacgcatcaatacagagactaacggaaattgattcgcccatattctactaaagaa 17607
Query: 353 ctttatctactagctcaacgcatatgcgtgtgatgcaccccttcgtatagtaataagtaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17606 ctttatctactagctcaacgcatatgcgtgtgatgcaccccttcgtatagtaataagtaa 17547
Query: 413 ctgacatataatattcatgtactgcctatgtattatccgtttactaggtgatatcaccaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17546 ctgacatataatattcatgtactgcctatgtattatccgtttactaggtgatatcaccaa 17487
Query: 473 agtttaaaaactgactgaaacagttaaaataaaatagctaaagtacccgttgagagcana 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17486 agtttaaaaactgactgaaacagttaaaataaaatagctaaagtacccgttgagagcaaa 17427
Query: 533 gacgatcgagatataaagtctgacccgcgctttttaacgacgcattaagtgtttattggt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17426 gacgatcgagatataaagtctgacccgcgctttttaacgacgcattaagtgtttattggt 17367
Query: 593 gctcttatctacatttggttgtgctcctgtcgata-ttgtggtagccgggtgcttctt-c 650
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 17366 gctcttatctacatttggttgtgctcctgtcgatatttgtggtagccgggtgcttcttcc 17307
Query: 651 tgctatt-acaacgcc--ttttttgt-aaggaccctttaat-tttcaatctactgttcct 705
||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct: 17306 tgctattcacaacgccctttttttgtaaaggaccctttaatattccaatctactgttcct 17247
Query: 706 tgtc-actgaaagtacttggtttgagtggccttttacaggacttactttttccgtgagat 764
|||| ||||| |||||||||||||||| || | | |||||||||||||| | |||| ||
Sbjct: 17246 tgtcaactgagagtacttggtttgagttgcttctagcaggacttacttttccggtgaaat 17187
Query: 765 gaacgatcaggttgggaattctagtaaagaattaaattttnccatcaacat 815
|||||||||||||| |||| |||||||||||| || || ||||| ||||
Sbjct: 17186 gaacgatcaggttgagaatctcagtaaagaattagatatttccatcgacat 17136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6402
Number of Sequences: 1807
Number of extensions: 6402
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 1002
length of database: 10,358,551
effective HSP length: 16
effective length of query: 986
effective length of database: 10,329,639
effective search space: 10185024054
effective search space used: 10185024054
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)