BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA06FM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1756 0.0
>3x_Contig1760
Length = 27266
Score = 1756 bits (886), Expect = 0.0
Identities = 929/942 (98%), Gaps = 2/942 (0%)
Strand = Plus / Plus
Query: 84 aaaccttttaagcttgtaagagtagagaaaaagaacagcaaagataaggaggctaagaat 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 aaaccttttaagcttgtaagagtagagaaaaagaacagcaaagataaggaggctaagaat 3093
Query: 144 gataagattaagctgaaattccatggtacacggataaaagatgattcaacgatggtcgat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3094 gataagattaagctgaaattccatggtacacggataaaagatgattcaacgatggtcgat 3153
Query: 204 ttaattcaagagacaagctattata-ggaaagagacaacgcctttggtacaacaggtaac 262
|||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct: 3154 ttaattcaagagacaagcaagaaaaaggaaagagacaacgcctttggtacaacaggtaac 3213
Query: 263 gatgtagcacaggggactaaagtgaagtatgaaacggaaaagattgactatacttataag 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3214 gatgtagcacaggggactaaagtgaagtatgaaacggaaaagattgactatacttataag 3273
Query: 323 tttcagtttatcggtgcggatcagagaatattcaaaaataacgtatcaaaattgacaagg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3274 tttcagtttatcggtgcggatcagagaatattcaaaaataacgtatcaaaattgacaagg 3333
Query: 383 cttttcatgaaggagtttatgaaggtaaggaatgtcaggcttgcatcggatttcaaagaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3334 cttttcatgaaggagtttatgaaggtaaggaatgtcaggcttgcatcggatttcaaagaa 3393
Query: 443 aactacctacctctttacatttacgtagatcattccacacaatcacgaagtatgttcaaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3394 aactacctacctctttacatttacgtagatcattccacacaatcacgaagtatgttcaaa 3453
Query: 503 aggtatctacggaggaagataatagattacattagaccacttctaatgacactatcacat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 aggtatctacggaggaagataatagattacattagaccacttctaatgacactatcacat 3513
Query: 563 agttatgaaacgaaggagcaaggtagaaagttcgaaagaagaatcatgttaaaagtagat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3514 agttatgaaacgaaggagcaaggtagaaagttcgaaagaagaatcatgttaaaagtagat 3573
Query: 623 tcaattgtcaatacgctttcggaatatttaccatcagtttacttcaaatcagaagaagtg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 tcaattgtcaatacgctttcggaatatttaccatcagtttacttcaaatcagaagaagtg 3633
Query: 683 gattgtctgctattgcctagtcccgtatctgcgtttggaaggatgcattggttgaaaccc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 gattgtctgctattgcctagtcccgtatctgcgtttggaaggatgcattggttgaaaccc 3693
Query: 743 actaagaggcgcaacgtattttggggg-aaaatgtcaccaacgactacgttttcaaccta 801
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3694 actaagaggcgcaacgtattttgggggaaaaatgtcaccaacgactacgttttcaaccta 3753
Query: 802 agctatgatatgaaagtgacacgtagcggcattaaaagaatgagatacccgatcaatctt 861
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3754 agctatgatatgaaggtgacacgtagcggcattaaaagaatgagatacccgatcaatctt 3813
Query: 862 cattggaaatctttcaataatgcatttacagaatgggaatatnnctattngngaatatct 921
|||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 3814 cattggaaatctttcaataatgcatttacagaatgggaatattcctatttgtgaatatct 3873
Query: 922 cttccattatcatcatgtgcgagtagagcatttcttacttgcctcttatttatacatctg 981
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3874 cttccattatcatcatgtgcgagtagagcatttcttacttgcctctaatttatacatctg 3933
Query: 982 taaatatctatttccagtcccaaaccaaatcagtttaatgtt 1023
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3934 taaatatctatatccagtcccaaaccaaatcagtttaatgtt 3975
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7637
Number of Sequences: 1807
Number of extensions: 7637
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)